miRNA display CGI


Results 41 - 60 of 398 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11106 5' -60.2 NC_002794.1 + 53538 0.74 0.38241
Target:  5'- gGCGC-GGCGGCCGCacaGCCcGugGACGUa -3'
miRNA:   3'- -UGCGaCUGCUGGCG---CGGcCugCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 145302 0.74 0.390266
Target:  5'- cCGCUGucguauuaaacCGGCgCGCGgCGGGCGGCGCu -3'
miRNA:   3'- uGCGACu----------GCUG-GCGCgGCCUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 130467 0.74 0.390266
Target:  5'- gGCGCUGGCGGCuugCGUGCgCGacauGAUGGCGCa -3'
miRNA:   3'- -UGCGACUGCUG---GCGCG-GC----CUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 20363 0.74 0.390266
Target:  5'- -aGCUgGACcACCuGCGCCGGAucguCGACGCg -3'
miRNA:   3'- ugCGA-CUGcUGG-CGCGGCCU----GCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 70056 0.74 0.390266
Target:  5'- uCGCccggucgGGCGGCCGCaGCCGcagcaaGGCGACGCa -3'
miRNA:   3'- uGCGa------CUGCUGGCG-CGGC------CUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 55783 0.74 0.397426
Target:  5'- -aGCUGGCGuugGCCuccagcgagcgcaGCGCCGGGCGcggGCGCg -3'
miRNA:   3'- ugCGACUGC---UGG-------------CGCGGCCUGC---UGCG- -5'
11106 5' -60.2 NC_002794.1 + 184474 0.74 0.405481
Target:  5'- cGCGCgaACGGCgCGCGgggccccggacgcCCGGGCGGCGCg -3'
miRNA:   3'- -UGCGacUGCUG-GCGC-------------GGCCUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 145067 0.74 0.406292
Target:  5'- -aGCUGGCGGCgGgGCCGGACa--GCa -3'
miRNA:   3'- ugCGACUGCUGgCgCGGCCUGcugCG- -5'
11106 5' -60.2 NC_002794.1 + 130385 0.73 0.414458
Target:  5'- cCGCUGA-GGCCGCcuggcuGUCGGACGcCGCg -3'
miRNA:   3'- uGCGACUgCUGGCG------CGGCCUGCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 120088 0.73 0.422724
Target:  5'- -gGCggcGACGACCGUGCCGaGCGcgccGCGCg -3'
miRNA:   3'- ugCGa--CUGCUGGCGCGGCcUGC----UGCG- -5'
11106 5' -60.2 NC_002794.1 + 105428 0.73 0.422724
Target:  5'- -gGgUGGCcgccGCCGCGCCGG-CGGCGCc -3'
miRNA:   3'- ugCgACUGc---UGGCGCGGCCuGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 49681 0.73 0.422724
Target:  5'- aGCGCaagcgGACGAgUCGCGUCGGcACGACGa -3'
miRNA:   3'- -UGCGa----CUGCU-GGCGCGGCC-UGCUGCg -5'
11106 5' -60.2 NC_002794.1 + 105917 0.73 0.431089
Target:  5'- gGCGCU-ACcGCCGcCGCCGGACgggcugGACGCg -3'
miRNA:   3'- -UGCGAcUGcUGGC-GCGGCCUG------CUGCG- -5'
11106 5' -60.2 NC_002794.1 + 107036 0.73 0.431089
Target:  5'- cCGCUGGgGAcccCCGCGUCGGaggcggcgggcGCGGCGCc -3'
miRNA:   3'- uGCGACUgCU---GGCGCGGCC-----------UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 14593 0.73 0.431089
Target:  5'- -gGCcgUGGCGAgCGCGCCGGGCacCGCg -3'
miRNA:   3'- ugCG--ACUGCUgGCGCGGCCUGcuGCG- -5'
11106 5' -60.2 NC_002794.1 + 183600 0.73 0.43955
Target:  5'- -gGCggagGGgGGCCGCGCgCGGcCGGCGCc -3'
miRNA:   3'- ugCGa---CUgCUGGCGCG-GCCuGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 113426 0.73 0.43955
Target:  5'- cACGUcGGCGuucuGCCGCGCCGucuCGGCGCu -3'
miRNA:   3'- -UGCGaCUGC----UGGCGCGGCcu-GCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 62476 0.73 0.448105
Target:  5'- gGCGCgccucGACGAgCGCGaguggacggCGGGCGGCGCc -3'
miRNA:   3'- -UGCGa----CUGCUgGCGCg--------GCCUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 102514 0.73 0.448105
Target:  5'- -gGCUGGCG-CgCGCGCgGGACGACc- -3'
miRNA:   3'- ugCGACUGCuG-GCGCGgCCUGCUGcg -5'
11106 5' -60.2 NC_002794.1 + 151565 0.73 0.448105
Target:  5'- cUGCUGACGua-GCGCCccccGGCGGCGCg -3'
miRNA:   3'- uGCGACUGCuggCGCGGc---CUGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.