miRNA display CGI


Results 21 - 40 of 398 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11106 5' -60.2 NC_002794.1 + 16301 0.66 0.839661
Target:  5'- aGC-CUGGCGGCCGCGgCCGGcUGGaucccccUGCc -3'
miRNA:   3'- -UGcGACUGCUGGCGC-GGCCuGCU-------GCG- -5'
11106 5' -60.2 NC_002794.1 + 16774 0.68 0.6998
Target:  5'- cACGa--ACGGCaCGCGCCGacgccaaaucgccGACGACGCc -3'
miRNA:   3'- -UGCgacUGCUG-GCGCGGC-------------CUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 17489 0.68 0.738119
Target:  5'- cGCGUUuGCGAUCGCcgacGCCGGccgagauCGGCGCc -3'
miRNA:   3'- -UGCGAcUGCUGGCG----CGGCCu------GCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 17984 0.66 0.808438
Target:  5'- gGCGCccACGGCCGCcgGCgaguacuacgaGGACGGCGUg -3'
miRNA:   3'- -UGCGacUGCUGGCG--CGg----------CCUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 18033 0.67 0.774179
Target:  5'- uACG-UGACGGCCGCcaccccGCCGGAucugcUGcACGCc -3'
miRNA:   3'- -UGCgACUGCUGGCG------CGGCCU-----GC-UGCG- -5'
11106 5' -60.2 NC_002794.1 + 18249 0.7 0.575992
Target:  5'- cGCGCggccgaccGGCGACCGCGagaUGcGCGGCGCc -3'
miRNA:   3'- -UGCGa-------CUGCUGGCGCg--GCcUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 18509 0.66 0.824745
Target:  5'- cCGCgaacGCGACCGCGaacgCGGccGCGaACGCg -3'
miRNA:   3'- uGCGac--UGCUGGCGCg---GCC--UGC-UGCG- -5'
11106 5' -60.2 NC_002794.1 + 18889 0.71 0.526067
Target:  5'- gGCGCgGAgcgucaccccucccCGACgGCGcCCGGACuGGCGCu -3'
miRNA:   3'- -UGCGaCU--------------GCUGgCGC-GGCCUG-CUGCG- -5'
11106 5' -60.2 NC_002794.1 + 19326 0.79 0.211352
Target:  5'- cGCGCUGGCGACCcgcGCGCCGGucacccccuCGcCGCc -3'
miRNA:   3'- -UGCGACUGCUGG---CGCGGCCu--------GCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 19515 0.69 0.662553
Target:  5'- cGCGCcgcuCGGa-GCGCCGGcGCGGCGCg -3'
miRNA:   3'- -UGCGacu-GCUggCGCGGCC-UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 20048 0.75 0.337529
Target:  5'- cGCGCUcGACcaGAUCGCGCUGuuCGACGCg -3'
miRNA:   3'- -UGCGA-CUG--CUGGCGCGGCcuGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 20363 0.74 0.390266
Target:  5'- -aGCUgGACcACCuGCGCCGGAucguCGACGCg -3'
miRNA:   3'- ugCGA-CUGcUGG-CGCGGCCU----GCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 20411 0.69 0.672152
Target:  5'- aGCGggGccacACGGucuaccCCGCGCCGGAgGACGUg -3'
miRNA:   3'- -UGCgaC----UGCU------GGCGCGGCCUgCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 20697 0.68 0.694108
Target:  5'- cCGCgGACGACCGgGCUcgcacgaacaccuGGgcuggcagacccuguGCGACGCg -3'
miRNA:   3'- uGCGaCUGCUGGCgCGG-------------CC---------------UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 21603 0.66 0.832668
Target:  5'- gUGCccgUGACccACCGCGCCgucgccgggaGGACGACGa -3'
miRNA:   3'- uGCG---ACUGc-UGGCGCGG----------CCUGCUGCg -5'
11106 5' -60.2 NC_002794.1 + 21886 0.69 0.633653
Target:  5'- cCGCgggGuguccGCGGCCuGCGUCGGugGugGCn -3'
miRNA:   3'- uGCGa--C-----UGCUGG-CGCGGCCugCugCG- -5'
11106 5' -60.2 NC_002794.1 + 21920 0.79 0.192487
Target:  5'- gGCGgaGACGACgGCGgCGGcGCGGCGCu -3'
miRNA:   3'- -UGCgaCUGCUGgCGCgGCC-UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 23605 0.67 0.791564
Target:  5'- cCGCcGAccCGACCccgcggGCGcCCGGACG-CGCg -3'
miRNA:   3'- uGCGaCU--GCUGG------CGC-GGCCUGCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 26630 0.67 0.765314
Target:  5'- cCGUccGCGuCCGCGCaccCGGACGGCGg -3'
miRNA:   3'- uGCGacUGCuGGCGCG---GCCUGCUGCg -5'
11106 5' -60.2 NC_002794.1 + 27381 0.68 0.700746
Target:  5'- cACGCacgGGuCGACCGa-CCGGAUGACcGCu -3'
miRNA:   3'- -UGCGa--CU-GCUGGCgcGGCCUGCUG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.