miRNA display CGI


Results 41 - 60 of 398 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11106 5' -60.2 NC_002794.1 + 30989 0.67 0.765314
Target:  5'- -gGC-GACGGCgGggucuuCGCCGGACGuCGCc -3'
miRNA:   3'- ugCGaCUGCUGgC------GCGGCCUGCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 32262 0.75 0.352054
Target:  5'- gGCGCUcGACGGCCG-GCCGaucggcgaGCGACGCc -3'
miRNA:   3'- -UGCGA-CUGCUGGCgCGGCc-------UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 32304 0.77 0.248187
Target:  5'- cCGC-GGCGGCCGCGCCGGccGCGGC-Cg -3'
miRNA:   3'- uGCGaCUGCUGGCGCGGCC--UGCUGcG- -5'
11106 5' -60.2 NC_002794.1 + 32438 0.71 0.528853
Target:  5'- uGCGC-GGCGAucaccgUCGUGcCCGuGACGACGCa -3'
miRNA:   3'- -UGCGaCUGCU------GGCGC-GGC-CUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 32497 0.69 0.650042
Target:  5'- aAUGCUcGACGucuugccggcucccGCCGUGCCGGugaugagcaaGACGCg -3'
miRNA:   3'- -UGCGA-CUGC--------------UGGCGCGGCCug--------CUGCG- -5'
11106 5' -60.2 NC_002794.1 + 32577 0.67 0.782932
Target:  5'- cGCGC--GCGGCgGUGCCGGGgcCGGgGCc -3'
miRNA:   3'- -UGCGacUGCUGgCGCGGCCU--GCUgCG- -5'
11106 5' -60.2 NC_002794.1 + 32645 0.68 0.738119
Target:  5'- -gGC-GACGACCGgGgC-GACGGCGCc -3'
miRNA:   3'- ugCGaCUGCUGGCgCgGcCUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 32872 0.67 0.791564
Target:  5'- -gGCgGGCGGCgGCGgCGG-CGGCGg -3'
miRNA:   3'- ugCGaCUGCUGgCGCgGCCuGCUGCg -5'
11106 5' -60.2 NC_002794.1 + 33565 0.69 0.652932
Target:  5'- cUGCUGACGAUCGaccaGgUGGugGAcCGCc -3'
miRNA:   3'- uGCGACUGCUGGCg---CgGCCugCU-GCG- -5'
11106 5' -60.2 NC_002794.1 + 34080 0.69 0.652932
Target:  5'- cCGCcGGCGGCCGggcagcCGUCGGGCGGCcCg -3'
miRNA:   3'- uGCGaCUGCUGGC------GCGGCCUGCUGcG- -5'
11106 5' -60.2 NC_002794.1 + 34274 0.68 0.719566
Target:  5'- cGCGCaGGCGGCCaGCGCCaG-CGAC-Cg -3'
miRNA:   3'- -UGCGaCUGCUGG-CGCGGcCuGCUGcG- -5'
11106 5' -60.2 NC_002794.1 + 34340 0.67 0.791564
Target:  5'- -gGC-GACGGCCGCGCCGuucCGccCGCu -3'
miRNA:   3'- ugCGaCUGCUGGCGCGGCcu-GCu-GCG- -5'
11106 5' -60.2 NC_002794.1 + 34730 0.8 0.175114
Target:  5'- gGCGCgGGCGGCCGCagaGCgCGcGACGGCGCg -3'
miRNA:   3'- -UGCGaCUGCUGGCG---CG-GC-CUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 35044 0.69 0.632688
Target:  5'- -gGCUGAuggagguccaccaUGACCGcCGCUGcGugGGCGCc -3'
miRNA:   3'- ugCGACU-------------GCUGGC-GCGGC-CugCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 35411 0.69 0.633653
Target:  5'- cCGCgucuCGACCGCcCUGGACGACa- -3'
miRNA:   3'- uGCGacu-GCUGGCGcGGCCUGCUGcg -5'
11106 5' -60.2 NC_002794.1 + 36973 0.67 0.774179
Target:  5'- cGCGCagGAgGAUCGCGCgcaGGuCGGCGa -3'
miRNA:   3'- -UGCGa-CUgCUGGCGCGg--CCuGCUGCg -5'
11106 5' -60.2 NC_002794.1 + 37253 0.71 0.54662
Target:  5'- gACGCUcucgcucuccgucGGCGGgCGCGCgGGcGCGGCGUa -3'
miRNA:   3'- -UGCGA-------------CUGCUgGCGCGgCC-UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 37537 0.67 0.790707
Target:  5'- -gGCUGGCGAacaGcCGCCGGAggggccaCGACcGCg -3'
miRNA:   3'- ugCGACUGCUgg-C-GCGGCCU-------GCUG-CG- -5'
11106 5' -60.2 NC_002794.1 + 37729 0.73 0.448105
Target:  5'- cCGCgaGCGGCgGCGCCGccggcGGCGGCGCg -3'
miRNA:   3'- uGCGacUGCUGgCGCGGC-----CUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 38113 0.68 0.738119
Target:  5'- gACGCggGAgaGCCGCGCCagcugGGGCGugGa -3'
miRNA:   3'- -UGCGa-CUgcUGGCGCGG-----CCUGCugCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.