miRNA display CGI


Results 21 - 40 of 398 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11106 5' -60.2 NC_002794.1 + 185406 0.69 0.662553
Target:  5'- gGCGCgGGCccGACCGcCGUCGacuCGACGCg -3'
miRNA:   3'- -UGCGaCUG--CUGGC-GCGGCcu-GCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 185156 0.69 0.681722
Target:  5'- uCGCcGACGcguCCucCGCCGGcGCGGCGCg -3'
miRNA:   3'- uGCGaCUGCu--GGc-GCGGCC-UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 184828 0.71 0.538179
Target:  5'- cACGCguccgGGCGcACCGCgcagcgauacguGCCGGACGGcCGUu -3'
miRNA:   3'- -UGCGa----CUGC-UGGCG------------CGGCCUGCU-GCG- -5'
11106 5' -60.2 NC_002794.1 + 184635 0.66 0.824745
Target:  5'- cACGaucGGCG-UCGCGUCGG-CGGCGUa -3'
miRNA:   3'- -UGCga-CUGCuGGCGCGGCCuGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 184474 0.74 0.405481
Target:  5'- cGCGCgaACGGCgCGCGgggccccggacgcCCGGGCGGCGCg -3'
miRNA:   3'- -UGCGacUGCUG-GCGC-------------GGCCUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 183677 0.67 0.756344
Target:  5'- aGCGCcGACGggucgagcgcccGCCGCGCgCGG-CGGCa- -3'
miRNA:   3'- -UGCGaCUGC------------UGGCGCG-GCCuGCUGcg -5'
11106 5' -60.2 NC_002794.1 + 183600 0.73 0.43955
Target:  5'- -gGCggagGGgGGCCGCGCgCGGcCGGCGCc -3'
miRNA:   3'- ugCGa---CUgCUGGCGCG-GCCuGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 183190 0.68 0.710186
Target:  5'- cCGa-GACGcGCCGCcacGCCGG-CGGCGCg -3'
miRNA:   3'- uGCgaCUGC-UGGCG---CGGCCuGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 183006 0.68 0.697905
Target:  5'- cCGCgGGCGccccgcgcgcgcccGCCGCcCCGGACGAagaaGCa -3'
miRNA:   3'- uGCGaCUGC--------------UGGCGcGGCCUGCUg---CG- -5'
11106 5' -60.2 NC_002794.1 + 182537 0.7 0.604741
Target:  5'- aGCGCggcaGCGACUGCGCCGcGGcCGGCa- -3'
miRNA:   3'- -UGCGac--UGCUGGCGCGGC-CU-GCUGcg -5'
11106 5' -60.2 NC_002794.1 + 182059 0.66 0.808438
Target:  5'- uGCGCguagGGCGcCUGCGuCCGGuCGGC-Ca -3'
miRNA:   3'- -UGCGa---CUGCuGGCGC-GGCCuGCUGcG- -5'
11106 5' -60.2 NC_002794.1 + 181924 0.66 0.800069
Target:  5'- cGCGC-GACGGCCGUcucCCGGGaGcCGCa -3'
miRNA:   3'- -UGCGaCUGCUGGCGc--GGCCUgCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 181762 0.69 0.643296
Target:  5'- cCGCUGACGccgauggcGCCGCGCCGccGCGucuCGUu -3'
miRNA:   3'- uGCGACUGC--------UGGCGCGGCc-UGCu--GCG- -5'
11106 5' -60.2 NC_002794.1 + 181684 0.67 0.791564
Target:  5'- uGCGCgGACcGCCGCGCCucGGCccacACGCu -3'
miRNA:   3'- -UGCGaCUGcUGGCGCGGc-CUGc---UGCG- -5'
11106 5' -60.2 NC_002794.1 + 181438 0.67 0.774179
Target:  5'- cCGUcGGCGagggGCCGC-CCGGAgGACGUc -3'
miRNA:   3'- uGCGaCUGC----UGGCGcGGCCUgCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 180358 0.72 0.510387
Target:  5'- cACGCagagGACGACCgGCGCgaGGACGcUGCc -3'
miRNA:   3'- -UGCGa---CUGCUGG-CGCGg-CCUGCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 180284 0.66 0.84043
Target:  5'- uCGCggcccGCGccGCCGCaacacGCCGGcCGGCGCg -3'
miRNA:   3'- uGCGac---UGC--UGGCG-----CGGCCuGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 180017 0.67 0.782932
Target:  5'- cACGaC-GACGGCCGCgGCCGucCGAccCGCa -3'
miRNA:   3'- -UGC-GaCUGCUGGCG-CGGCcuGCU--GCG- -5'
11106 5' -60.2 NC_002794.1 + 179690 0.74 0.367016
Target:  5'- gACGgUGGCGGCgGCGaCGGugGCGACGCc -3'
miRNA:   3'- -UGCgACUGCUGgCGCgGCC--UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 179248 0.66 0.832668
Target:  5'- gGCGUcGGCGAgaCCGcCGCCGa--GACGCu -3'
miRNA:   3'- -UGCGaCUGCU--GGC-GCGGCcugCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.