miRNA display CGI


Results 41 - 60 of 398 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11106 5' -60.2 NC_002794.1 + 94226 0.66 0.84043
Target:  5'- gGCGacgGGCGGgCGgGCCGG-UGACGg -3'
miRNA:   3'- -UGCga-CUGCUgGCgCGGCCuGCUGCg -5'
11106 5' -60.2 NC_002794.1 + 136412 0.66 0.84043
Target:  5'- uGCGCUGaACGGCgGUccauaaCCGGAgCGGCGg -3'
miRNA:   3'- -UGCGAC-UGCUGgCGc-----GGCCU-GCUGCg -5'
11106 5' -60.2 NC_002794.1 + 119432 0.66 0.84043
Target:  5'- uCGCagguccGACGGCgGCGgCGGugGCGGCGUc -3'
miRNA:   3'- uGCGa-----CUGCUGgCGCgGCC--UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 68974 0.66 0.84043
Target:  5'- cCGCg---GGCCGCgacGCCGGcguCGACGCu -3'
miRNA:   3'- uGCGacugCUGGCG---CGGCCu--GCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 180284 0.66 0.84043
Target:  5'- uCGCggcccGCGccGCCGCaacacGCCGGcCGGCGCg -3'
miRNA:   3'- uGCGac---UGC--UGGCG-----CGGCCuGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 21603 0.66 0.832668
Target:  5'- gUGCccgUGACccACCGCGCCgucgccgggaGGACGACGa -3'
miRNA:   3'- uGCG---ACUGc-UGGCGCGG----------CCUGCUGCg -5'
11106 5' -60.2 NC_002794.1 + 141947 0.66 0.832668
Target:  5'- -gGC-GGCGACC-CGuuGGACGGC-Cg -3'
miRNA:   3'- ugCGaCUGCUGGcGCggCCUGCUGcG- -5'
11106 5' -60.2 NC_002794.1 + 101432 0.66 0.824745
Target:  5'- uGCGC-GACGAuCCGgggaCGCCGG-CG-CGCc -3'
miRNA:   3'- -UGCGaCUGCU-GGC----GCGGCCuGCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 49456 0.66 0.824745
Target:  5'- uCGCcgUGGCGccGCCGUGaCCGGcCGcCGCg -3'
miRNA:   3'- uGCG--ACUGC--UGGCGC-GGCCuGCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 115998 0.66 0.824745
Target:  5'- cGCGgaGACcgcggaGACCGCGgUGGcgauUGGCGCg -3'
miRNA:   3'- -UGCgaCUG------CUGGCGCgGCCu---GCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 126578 0.66 0.824745
Target:  5'- cUGCUGAUcaucuuaccggGACUgaGCGCCGaGGcCGGCGCc -3'
miRNA:   3'- uGCGACUG-----------CUGG--CGCGGC-CU-GCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 190991 0.66 0.824745
Target:  5'- aGCGC-GGCGACgGCGUCGcGAuCGGcCGUu -3'
miRNA:   3'- -UGCGaCUGCUGgCGCGGC-CU-GCU-GCG- -5'
11106 5' -60.2 NC_002794.1 + 127607 0.66 0.824745
Target:  5'- cCGCUGAgCGG-CGCGgaCCGGAcucgucguCGACGCc -3'
miRNA:   3'- uGCGACU-GCUgGCGC--GGCCU--------GCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 86074 0.66 0.831883
Target:  5'- cAUGCgGAUcucaucgGACCGcCGCCGGGacgGAUGCu -3'
miRNA:   3'- -UGCGaCUG-------CUGGC-GCGGCCUg--CUGCG- -5'
11106 5' -60.2 NC_002794.1 + 59349 0.66 0.831883
Target:  5'- cGCGCUcuacaacGGCuGCUGCGCCaccACGGCGCc -3'
miRNA:   3'- -UGCGA-------CUGcUGGCGCGGcc-UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 99282 0.66 0.827139
Target:  5'- cGCGCUcccgggcucuuccGCGACCGcCGCCaccaaguacacgacGGAgGACGCc -3'
miRNA:   3'- -UGCGAc------------UGCUGGC-GCGG--------------CCUgCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 70989 0.66 0.832668
Target:  5'- aACGCcucGAUGGCCGUGagcCCGGAC--CGCa -3'
miRNA:   3'- -UGCGa--CUGCUGGCGC---GGCCUGcuGCG- -5'
11106 5' -60.2 NC_002794.1 + 124013 0.66 0.832668
Target:  5'- -aGCgGGCGGCCGCGgaagagaCGGugGcCGUc -3'
miRNA:   3'- ugCGaCUGCUGGCGCg------GCCugCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 134739 0.66 0.832668
Target:  5'- gGCGCUGAuuCGGCaauucaccCCGGACGuCGCg -3'
miRNA:   3'- -UGCGACU--GCUGgcgc----GGCCUGCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 193801 0.66 0.832668
Target:  5'- gACGCcGGCGcCCGCucguCUGGcgcCGACGCg -3'
miRNA:   3'- -UGCGaCUGCuGGCGc---GGCCu--GCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.