miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11107 3' -54.8 NC_002794.1 + 118889 0.66 0.973673
Target:  5'- -----gUCGGCCCGGUGUUcgcguagguccgugGCGGUgGg -3'
miRNA:   3'- cuagcaAGCUGGGCCAUAA--------------CGCCGgC- -5'
11107 3' -54.8 NC_002794.1 + 71570 0.66 0.97341
Target:  5'- --cUGggCGAUCCGGUAcacgcgcuuccacUGCGGCUGg -3'
miRNA:   3'- cuaGCaaGCUGGGCCAUa------------ACGCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 189573 0.66 0.971793
Target:  5'- cGGUCGgcCGGCCCGGgccgGC-GCCc -3'
miRNA:   3'- -CUAGCaaGCUGGGCCauaaCGcCGGc -5'
11107 3' -54.8 NC_002794.1 + 185185 0.66 0.968942
Target:  5'- cGGUCGgcgcggUCGGCgCGGUcAUcGCGGCUc -3'
miRNA:   3'- -CUAGCa-----AGCUGgGCCA-UAaCGCCGGc -5'
11107 3' -54.8 NC_002794.1 + 123672 0.66 0.965892
Target:  5'- uGUCGcUCGGCCCGGgcUgggaGCaGGCgCGa -3'
miRNA:   3'- cUAGCaAGCUGGGCCauAa---CG-CCG-GC- -5'
11107 3' -54.8 NC_002794.1 + 111093 0.66 0.965892
Target:  5'- gGGUCGgcgGGCCCGGcgggaccGUGGCCGu -3'
miRNA:   3'- -CUAGCaagCUGGGCCauaa---CGCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 129051 0.66 0.965892
Target:  5'- cGGUCGUggCGcGCgaCGGUGUgucGCGGCUGg -3'
miRNA:   3'- -CUAGCAa-GC-UGg-GCCAUAa--CGCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 4126 0.66 0.959172
Target:  5'- --cCGUUCGuuCCCGGggucUUGCGaGCCc -3'
miRNA:   3'- cuaGCAAGCu-GGGCCau--AACGC-CGGc -5'
11107 3' -54.8 NC_002794.1 + 149730 0.66 0.959172
Target:  5'- -cUCGcuacggCGugCCGGUGgaGCGGCgGg -3'
miRNA:   3'- cuAGCaa----GCugGGCCAUaaCGCCGgC- -5'
11107 3' -54.8 NC_002794.1 + 126063 0.67 0.955492
Target:  5'- uGGUCGcgCGccugGCCUGGaccggccUGCGGCCGa -3'
miRNA:   3'- -CUAGCaaGC----UGGGCCaua----ACGCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 81175 0.67 0.955492
Target:  5'- -----gUCGACCCGGaca-GCGGCUGu -3'
miRNA:   3'- cuagcaAGCUGGGCCauaaCGCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 19596 0.67 0.951593
Target:  5'- ------cCGGCCCGGcga-GCGGCCGa -3'
miRNA:   3'- cuagcaaGCUGGGCCauaaCGCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 186053 0.67 0.951593
Target:  5'- cGUCGUUC--CCCGGUcc-GUGGCCa -3'
miRNA:   3'- cUAGCAAGcuGGGCCAuaaCGCCGGc -5'
11107 3' -54.8 NC_002794.1 + 32818 0.67 0.949147
Target:  5'- cGUCGUcuucgUCGGCCucgcggccggcucauCGGUAgcggcaGCGGCCGa -3'
miRNA:   3'- cUAGCA-----AGCUGG---------------GCCAUaa----CGCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 49402 0.67 0.947472
Target:  5'- cGUCGgccacggCGGCCgCGGcggcgGCGGCCGu -3'
miRNA:   3'- cUAGCaa-----GCUGG-GCCauaa-CGCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 179109 0.67 0.947472
Target:  5'- cGGUCGUccgCGGUCCGGgcgcGCGGUCGg -3'
miRNA:   3'- -CUAGCAa--GCUGGGCCauaaCGCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 99926 0.67 0.943126
Target:  5'- --cCGUgCGGCgUGGUcUUGCGGCUGu -3'
miRNA:   3'- cuaGCAaGCUGgGCCAuAACGCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 91861 0.67 0.943126
Target:  5'- ---aGUUCGAggguCCCGGggGUggcggcgGCGGCCGc -3'
miRNA:   3'- cuagCAAGCU----GGGCCa-UAa------CGCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 121972 0.67 0.942679
Target:  5'- --cCGUgCGGCUCGGUcccgccgAgcGCGGCCGg -3'
miRNA:   3'- cuaGCAaGCUGGGCCA-------UaaCGCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 77916 0.68 0.933748
Target:  5'- --cCGUUCGACCCGGUcc-GCcgaaacccGCCGg -3'
miRNA:   3'- cuaGCAAGCUGGGCCAuaaCGc-------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.