miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11107 3' -54.8 NC_002794.1 + 50723 0.76 0.557218
Target:  5'- --gCGUUCGccGCCCGGg---GCGGCCGc -3'
miRNA:   3'- cuaGCAAGC--UGGGCCauaaCGCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 154330 0.74 0.667349
Target:  5'- cGUCGgUCGuCCCGGgugccGCGGCCGa -3'
miRNA:   3'- cUAGCaAGCuGGGCCauaa-CGCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 121201 0.74 0.637218
Target:  5'- cGAUCGgggUCGACuUCGGgg--GCGGCCGc -3'
miRNA:   3'- -CUAGCa--AGCUG-GGCCauaaCGCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 176632 0.73 0.687312
Target:  5'- --gCGUUCGGCCCGGaacguuggAUUGCGGacaCGa -3'
miRNA:   3'- cuaGCAAGCUGGGCCa-------UAACGCCg--GC- -5'
11107 3' -54.8 NC_002794.1 + 36993 0.73 0.687312
Target:  5'- aGGUCGgcgaggCgGACCCGGUAgaGCGGCuCGg -3'
miRNA:   3'- -CUAGCaa----G-CUGGGCCAUaaCGCCG-GC- -5'
11107 3' -54.8 NC_002794.1 + 20381 0.71 0.800951
Target:  5'- gGAUCG-UCGACgCGGUGcgGCGGgaCCGg -3'
miRNA:   3'- -CUAGCaAGCUGgGCCAUaaCGCC--GGC- -5'
11107 3' -54.8 NC_002794.1 + 51200 0.71 0.800951
Target:  5'- -cUCGUUCGcucGCCCGcGga--GCGGCCGg -3'
miRNA:   3'- cuAGCAAGC---UGGGC-CauaaCGCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 70049 0.7 0.826616
Target:  5'- --aCGUaggUCG-CCCGGUcggGCGGCCGc -3'
miRNA:   3'- cuaGCA---AGCuGGGCCAuaaCGCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 89563 0.7 0.834839
Target:  5'- cGUCGUgccgagCGuCCCGGUGUcauCGGCCGu -3'
miRNA:   3'- cUAGCAa-----GCuGGGCCAUAac-GCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 187674 0.7 0.865883
Target:  5'- cGAUCGggCGAUgCGGgucgaGCGGCCc -3'
miRNA:   3'- -CUAGCaaGCUGgGCCauaa-CGCCGGc -5'
11107 3' -54.8 NC_002794.1 + 115183 0.7 0.865883
Target:  5'- ------aCGGCCCGGUGccgGCGGUCGa -3'
miRNA:   3'- cuagcaaGCUGGGCCAUaa-CGCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 124376 0.69 0.900089
Target:  5'- -uUCGUUCGcCUCGGUcgcgGCGGCgCGu -3'
miRNA:   3'- cuAGCAAGCuGGGCCAuaa-CGCCG-GC- -5'
11107 3' -54.8 NC_002794.1 + 102673 0.69 0.87315
Target:  5'- cGAgCGUgggCGACCgGGUGUcguacgugcUGaCGGCCGg -3'
miRNA:   3'- -CUaGCAa--GCUGGgCCAUA---------AC-GCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 109530 0.69 0.887055
Target:  5'- -cUCGUUCGGCgUCGGgccggGCGGaCCGg -3'
miRNA:   3'- cuAGCAAGCUG-GGCCauaa-CGCC-GGC- -5'
11107 3' -54.8 NC_002794.1 + 117197 0.69 0.893682
Target:  5'- aGAUCGgcgUCgGGCCCGGgcggcucCGGCCGc -3'
miRNA:   3'- -CUAGCa--AG-CUGGGCCauaac--GCCGGC- -5'
11107 3' -54.8 NC_002794.1 + 188238 0.69 0.893682
Target:  5'- cGUCGUcgUCGACCggcggcggcggCGGUAgcgGCGGgCCGg -3'
miRNA:   3'- cUAGCA--AGCUGG-----------GCCAUaa-CGCC-GGC- -5'
11107 3' -54.8 NC_002794.1 + 66037 0.69 0.893682
Target:  5'- cGUCGUcgUCGGgCCGGcagcgGCGGCCu -3'
miRNA:   3'- cUAGCA--AGCUgGGCCauaa-CGCCGGc -5'
11107 3' -54.8 NC_002794.1 + 44243 0.68 0.906271
Target:  5'- --cCGggCGGCUCGGUGccggGCGGCuCGg -3'
miRNA:   3'- cuaGCaaGCUGGGCCAUaa--CGCCG-GC- -5'
11107 3' -54.8 NC_002794.1 + 615 0.68 0.912227
Target:  5'- cGGUCaggCGGCCCGGUGUgGCGuucGCCu -3'
miRNA:   3'- -CUAGcaaGCUGGGCCAUAaCGC---CGGc -5'
11107 3' -54.8 NC_002794.1 + 77916 0.68 0.933748
Target:  5'- --cCGUUCGACCCGGUcc-GCcgaaacccGCCGg -3'
miRNA:   3'- cuaGCAAGCUGGGCCAuaaCGc-------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.