Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11107 | 3' | -54.8 | NC_002794.1 | + | 123672 | 0.66 | 0.965892 |
Target: 5'- uGUCGcUCGGCCCGGgcUgggaGCaGGCgCGa -3' miRNA: 3'- cUAGCaAGCUGGGCCauAa---CG-CCG-GC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 4126 | 0.66 | 0.959172 |
Target: 5'- --cCGUUCGuuCCCGGggucUUGCGaGCCc -3' miRNA: 3'- cuaGCAAGCu-GGGCCau--AACGC-CGGc -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 149730 | 0.66 | 0.959172 |
Target: 5'- -cUCGcuacggCGugCCGGUGgaGCGGCgGg -3' miRNA: 3'- cuAGCaa----GCugGGCCAUaaCGCCGgC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 118889 | 0.66 | 0.973673 |
Target: 5'- -----gUCGGCCCGGUGUUcgcguagguccgugGCGGUgGg -3' miRNA: 3'- cuagcaAGCUGGGCCAUAA--------------CGCCGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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