Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11107 | 3' | -54.8 | NC_002794.1 | + | 91861 | 0.67 | 0.943126 |
Target: 5'- ---aGUUCGAggguCCCGGggGUggcggcgGCGGCCGc -3' miRNA: 3'- cuagCAAGCU----GGGCCa-UAa------CGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 99926 | 0.67 | 0.943126 |
Target: 5'- --cCGUgCGGCgUGGUcUUGCGGCUGu -3' miRNA: 3'- cuaGCAaGCUGgGCCAuAACGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 102673 | 0.69 | 0.87315 |
Target: 5'- cGAgCGUgggCGACCgGGUGUcguacgugcUGaCGGCCGg -3' miRNA: 3'- -CUaGCAa--GCUGGgCCAUA---------AC-GCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 109530 | 0.69 | 0.887055 |
Target: 5'- -cUCGUUCGGCgUCGGgccggGCGGaCCGg -3' miRNA: 3'- cuAGCAAGCUG-GGCCauaa-CGCC-GGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 111093 | 0.66 | 0.965892 |
Target: 5'- gGGUCGgcgGGCCCGGcgggaccGUGGCCGu -3' miRNA: 3'- -CUAGCaagCUGGGCCauaa---CGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 115183 | 0.7 | 0.865883 |
Target: 5'- ------aCGGCCCGGUGccgGCGGUCGa -3' miRNA: 3'- cuagcaaGCUGGGCCAUaa-CGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 117197 | 0.69 | 0.893682 |
Target: 5'- aGAUCGgcgUCgGGCCCGGgcggcucCGGCCGc -3' miRNA: 3'- -CUAGCa--AG-CUGGGCCauaac--GCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 118889 | 0.66 | 0.973673 |
Target: 5'- -----gUCGGCCCGGUGUUcgcguagguccgugGCGGUgGg -3' miRNA: 3'- cuagcaAGCUGGGCCAUAA--------------CGCCGgC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 121201 | 0.74 | 0.637218 |
Target: 5'- cGAUCGgggUCGACuUCGGgg--GCGGCCGc -3' miRNA: 3'- -CUAGCa--AGCUG-GGCCauaaCGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 121972 | 0.67 | 0.942679 |
Target: 5'- --cCGUgCGGCUCGGUcccgccgAgcGCGGCCGg -3' miRNA: 3'- cuaGCAaGCUGGGCCA-------UaaCGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 123672 | 0.66 | 0.965892 |
Target: 5'- uGUCGcUCGGCCCGGgcUgggaGCaGGCgCGa -3' miRNA: 3'- cUAGCaAGCUGGGCCauAa---CG-CCG-GC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 124376 | 0.69 | 0.900089 |
Target: 5'- -uUCGUUCGcCUCGGUcgcgGCGGCgCGu -3' miRNA: 3'- cuAGCAAGCuGGGCCAuaa-CGCCG-GC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 126063 | 0.67 | 0.955492 |
Target: 5'- uGGUCGcgCGccugGCCUGGaccggccUGCGGCCGa -3' miRNA: 3'- -CUAGCaaGC----UGGGCCaua----ACGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 129051 | 0.66 | 0.965892 |
Target: 5'- cGGUCGUggCGcGCgaCGGUGUgucGCGGCUGg -3' miRNA: 3'- -CUAGCAa-GC-UGg-GCCAUAa--CGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 149730 | 0.66 | 0.959172 |
Target: 5'- -cUCGcuacggCGugCCGGUGgaGCGGCgGg -3' miRNA: 3'- cuAGCaa----GCugGGCCAUaaCGCCGgC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 154330 | 0.74 | 0.667349 |
Target: 5'- cGUCGgUCGuCCCGGgugccGCGGCCGa -3' miRNA: 3'- cUAGCaAGCuGGGCCauaa-CGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 176632 | 0.73 | 0.687312 |
Target: 5'- --gCGUUCGGCCCGGaacguuggAUUGCGGacaCGa -3' miRNA: 3'- cuaGCAAGCUGGGCCa-------UAACGCCg--GC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 179109 | 0.67 | 0.947472 |
Target: 5'- cGGUCGUccgCGGUCCGGgcgcGCGGUCGg -3' miRNA: 3'- -CUAGCAa--GCUGGGCCauaaCGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 185185 | 0.66 | 0.968942 |
Target: 5'- cGGUCGgcgcggUCGGCgCGGUcAUcGCGGCUc -3' miRNA: 3'- -CUAGCa-----AGCUGgGCCA-UAaCGCCGGc -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 186053 | 0.67 | 0.951593 |
Target: 5'- cGUCGUUC--CCCGGUcc-GUGGCCa -3' miRNA: 3'- cUAGCAAGcuGGGCCAuaaCGCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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