Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11107 | 3' | -54.8 | NC_002794.1 | + | 109530 | 0.69 | 0.887055 |
Target: 5'- -cUCGUUCGGCgUCGGgccggGCGGaCCGg -3' miRNA: 3'- cuAGCAAGCUG-GGCCauaa-CGCC-GGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 102673 | 0.69 | 0.87315 |
Target: 5'- cGAgCGUgggCGACCgGGUGUcguacgugcUGaCGGCCGg -3' miRNA: 3'- -CUaGCAa--GCUGGgCCAUA---------AC-GCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 99926 | 0.67 | 0.943126 |
Target: 5'- --cCGUgCGGCgUGGUcUUGCGGCUGu -3' miRNA: 3'- cuaGCAaGCUGgGCCAuAACGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 91861 | 0.67 | 0.943126 |
Target: 5'- ---aGUUCGAggguCCCGGggGUggcggcgGCGGCCGc -3' miRNA: 3'- cuagCAAGCU----GGGCCa-UAa------CGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 89563 | 0.7 | 0.834839 |
Target: 5'- cGUCGUgccgagCGuCCCGGUGUcauCGGCCGu -3' miRNA: 3'- cUAGCAa-----GCuGGGCCAUAac-GCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 88994 | 0.68 | 0.906271 |
Target: 5'- aGAUCGcgaauaUCGACgUGG-AUUGUGGCCa -3' miRNA: 3'- -CUAGCa-----AGCUGgGCCaUAACGCCGGc -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 81175 | 0.67 | 0.955492 |
Target: 5'- -----gUCGACCCGGaca-GCGGCUGu -3' miRNA: 3'- cuagcaAGCUGGGCCauaaCGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 77916 | 0.68 | 0.933748 |
Target: 5'- --cCGUUCGACCCGGUcc-GCcgaaacccGCCGg -3' miRNA: 3'- cuaGCAAGCUGGGCCAuaaCGc-------CGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 71570 | 0.66 | 0.97341 |
Target: 5'- --cUGggCGAUCCGGUAcacgcgcuuccacUGCGGCUGg -3' miRNA: 3'- cuaGCaaGCUGGGCCAUa------------ACGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 70049 | 0.7 | 0.826616 |
Target: 5'- --aCGUaggUCG-CCCGGUcggGCGGCCGc -3' miRNA: 3'- cuaGCA---AGCuGGGCCAuaaCGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 66037 | 0.69 | 0.893682 |
Target: 5'- cGUCGUcgUCGGgCCGGcagcgGCGGCCu -3' miRNA: 3'- cUAGCA--AGCUgGGCCauaa-CGCCGGc -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 51200 | 0.71 | 0.800951 |
Target: 5'- -cUCGUUCGcucGCCCGcGga--GCGGCCGg -3' miRNA: 3'- cuAGCAAGC---UGGGC-CauaaCGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 50723 | 0.76 | 0.557218 |
Target: 5'- --gCGUUCGccGCCCGGg---GCGGCCGc -3' miRNA: 3'- cuaGCAAGC--UGGGCCauaaCGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 49402 | 0.67 | 0.947472 |
Target: 5'- cGUCGgccacggCGGCCgCGGcggcgGCGGCCGu -3' miRNA: 3'- cUAGCaa-----GCUGG-GCCauaa-CGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 49140 | 0.68 | 0.906271 |
Target: 5'- aGGUCGUugUCGACCCGaaaccaGCgGGCCGu -3' miRNA: 3'- -CUAGCA--AGCUGGGCcauaa-CG-CCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 44243 | 0.68 | 0.906271 |
Target: 5'- --cCGggCGGCUCGGUGccggGCGGCuCGg -3' miRNA: 3'- cuaGCaaGCUGGGCCAUaa--CGCCG-GC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 43982 | 0.68 | 0.917953 |
Target: 5'- uGGUCGUUgGAgCCGGacgUGUgggagcacggcGCGGCCGg -3' miRNA: 3'- -CUAGCAAgCUgGGCC---AUAa----------CGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 36993 | 0.73 | 0.687312 |
Target: 5'- aGGUCGgcgaggCgGACCCGGUAgaGCGGCuCGg -3' miRNA: 3'- -CUAGCaa----G-CUGGGCCAUaaCGCCG-GC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 32818 | 0.67 | 0.949147 |
Target: 5'- cGUCGUcuucgUCGGCCucgcggccggcucauCGGUAgcggcaGCGGCCGa -3' miRNA: 3'- cUAGCA-----AGCUGG---------------GCCAUaa----CGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 26636 | 0.68 | 0.917953 |
Target: 5'- --gCGUccgCGcACCCGGacg-GCGGCCGg -3' miRNA: 3'- cuaGCAa--GC-UGGGCCauaaCGCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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