Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11107 | 3' | -54.8 | NC_002794.1 | + | 179109 | 0.67 | 0.947472 |
Target: 5'- cGGUCGUccgCGGUCCGGgcgcGCGGUCGg -3' miRNA: 3'- -CUAGCAa--GCUGGGCCauaaCGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 49402 | 0.67 | 0.947472 |
Target: 5'- cGUCGgccacggCGGCCgCGGcggcgGCGGCCGu -3' miRNA: 3'- cUAGCaa-----GCUGG-GCCauaa-CGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 19596 | 0.67 | 0.951593 |
Target: 5'- ------cCGGCCCGGcga-GCGGCCGa -3' miRNA: 3'- cuagcaaGCUGGGCCauaaCGCCGGC- -5' |
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11107 | 3' | -54.8 | NC_002794.1 | + | 118889 | 0.66 | 0.973673 |
Target: 5'- -----gUCGGCCCGGUGUUcgcguagguccgugGCGGUgGg -3' miRNA: 3'- cuagcaAGCUGGGCCAUAA--------------CGCCGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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