miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11107 5' -59.1 NC_002794.1 + 162503 0.66 0.864047
Target:  5'- uCGCGUacguggcaGCUGGGUAuCUGGGCUuggguuuuuuggGugGUGa -3'
miRNA:   3'- -GCGCG--------UGGCUCAU-GACCCGG------------CugCAC- -5'
11107 5' -59.1 NC_002794.1 + 864 0.66 0.864047
Target:  5'- gCGCGCGCCcgcGAGgc---GGUCGGCGUGc -3'
miRNA:   3'- -GCGCGUGG---CUCaugacCCGGCUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 92627 0.66 0.862599
Target:  5'- gGCGCACC-AGUACUaccGGGCCuucuuccucauCGUGc -3'
miRNA:   3'- gCGCGUGGcUCAUGA---CCCGGcu---------GCAC- -5'
11107 5' -59.1 NC_002794.1 + 185350 0.66 0.856731
Target:  5'- uCGCGCGCCGcc-GCgagcGGGCCGaACGc- -3'
miRNA:   3'- -GCGCGUGGCucaUGa---CCCGGC-UGCac -5'
11107 5' -59.1 NC_002794.1 + 74768 0.66 0.855246
Target:  5'- aGCGCGCucguCGAGUACgacgaggucaaaGGGuuGACGg- -3'
miRNA:   3'- gCGCGUG----GCUCAUGa-----------CCCggCUGCac -5'
11107 5' -59.1 NC_002794.1 + 101775 0.66 0.84923
Target:  5'- cCGCGCGuccauccuguCCGAGUGCUGcGCCGcUGg- -3'
miRNA:   3'- -GCGCGU----------GGCUCAUGACcCGGCuGCac -5'
11107 5' -59.1 NC_002794.1 + 126381 0.66 0.841548
Target:  5'- uGgGCGCCGGGgcCUGcGcGgCGGCGUGc -3'
miRNA:   3'- gCgCGUGGCUCauGAC-C-CgGCUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 71784 0.66 0.841548
Target:  5'- uCGCGCGgCGAGUcgccccccgGC-GGGCgCGGCGa- -3'
miRNA:   3'- -GCGCGUgGCUCA---------UGaCCCG-GCUGCac -5'
11107 5' -59.1 NC_002794.1 + 63066 0.66 0.841548
Target:  5'- -cCGCGgCGAGcucCUGGGCCGGCuGUa -3'
miRNA:   3'- gcGCGUgGCUCau-GACCCGGCUG-CAc -5'
11107 5' -59.1 NC_002794.1 + 65127 0.66 0.833692
Target:  5'- gCGCGCcuguCCGAGcuccucggcgACUGGGUCGcCGUc -3'
miRNA:   3'- -GCGCGu---GGCUCa---------UGACCCGGCuGCAc -5'
11107 5' -59.1 NC_002794.1 + 44348 0.66 0.832897
Target:  5'- gGCGCcggcgagACCGAGaGCgcggcGGGCgCGACGUc -3'
miRNA:   3'- gCGCG-------UGGCUCaUGa----CCCG-GCUGCAc -5'
11107 5' -59.1 NC_002794.1 + 101030 0.67 0.825669
Target:  5'- aCGCGgGCCGGGcGC-GGGUCGGCc-- -3'
miRNA:   3'- -GCGCgUGGCUCaUGaCCCGGCUGcac -5'
11107 5' -59.1 NC_002794.1 + 80569 0.67 0.825669
Target:  5'- cCGCGCcguGCCGAcGcAC-GGGCUGACGg- -3'
miRNA:   3'- -GCGCG---UGGCU-CaUGaCCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 34783 0.67 0.817484
Target:  5'- cCGCGCcaGCCGAGUcggccgaaccgGCccGGGCCGcGCGa- -3'
miRNA:   3'- -GCGCG--UGGCUCA-----------UGa-CCCGGC-UGCac -5'
11107 5' -59.1 NC_002794.1 + 103805 0.67 0.809145
Target:  5'- gGUGCGCCugcgACggcGGcGCCGACGUGg -3'
miRNA:   3'- gCGCGUGGcucaUGa--CC-CGGCUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 190134 0.67 0.809145
Target:  5'- cCGCGCGCCGAuaccacgcGUACUGcuGG-CGGCGg- -3'
miRNA:   3'- -GCGCGUGGCU--------CAUGAC--CCgGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 106909 0.67 0.804071
Target:  5'- gGCGCugcuGCgCGAGUugUauuugaaaaagacgcGGGCCGGCGg- -3'
miRNA:   3'- gCGCG----UG-GCUCAugA---------------CCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 71208 0.67 0.795501
Target:  5'- gCGUGCucgucgaaggucccgGCCGcGUAgUGgcGGCCGGCGUGg -3'
miRNA:   3'- -GCGCG---------------UGGCuCAUgAC--CCGGCUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 90361 0.67 0.792034
Target:  5'- uGUGCACCGugcgcGUGCaGGGCCGGg--- -3'
miRNA:   3'- gCGCGUGGCu----CAUGaCCCGGCUgcac -5'
11107 5' -59.1 NC_002794.1 + 91109 0.67 0.783277
Target:  5'- uGUaCGCCGGGcaGCUGGuGCCGuGCGUGg -3'
miRNA:   3'- gCGcGUGGCUCa-UGACC-CGGC-UGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.