miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11107 5' -59.1 NC_002794.1 + 101030 0.67 0.825669
Target:  5'- aCGCGgGCCGGGcGC-GGGUCGGCc-- -3'
miRNA:   3'- -GCGCgUGGCUCaUGaCCCGGCUGcac -5'
11107 5' -59.1 NC_002794.1 + 103805 0.67 0.809145
Target:  5'- gGUGCGCCugcgACggcGGcGCCGACGUGg -3'
miRNA:   3'- gCGCGUGGcucaUGa--CC-CGGCUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 190134 0.67 0.809145
Target:  5'- cCGCGCGCCGAuaccacgcGUACUGcuGG-CGGCGg- -3'
miRNA:   3'- -GCGCGUGGCU--------CAUGAC--CCgGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 114669 0.68 0.725573
Target:  5'- gCGCGCGCCG-GUACUcggaccgcaGGGCCcggaccuccugcgaGACGg- -3'
miRNA:   3'- -GCGCGUGGCuCAUGA---------CCCGG--------------CUGCac -5'
11107 5' -59.1 NC_002794.1 + 102519 0.68 0.728403
Target:  5'- gCGCGCGCgCGGG-ACgaccucuucucGGGCCG-CGUGg -3'
miRNA:   3'- -GCGCGUG-GCUCaUGa----------CCCGGCuGCAC- -5'
11107 5' -59.1 NC_002794.1 + 130497 0.68 0.747085
Target:  5'- gGCGCAgCGAGUgcgccucgcccACUcgagcGGGCUGACcGUGa -3'
miRNA:   3'- gCGCGUgGCUCA-----------UGA-----CCCGGCUG-CAC- -5'
11107 5' -59.1 NC_002794.1 + 100810 0.68 0.728403
Target:  5'- uGCGCcuacguGCCGGGcgGCggGGGCCGGCa-- -3'
miRNA:   3'- gCGCG------UGGCUCa-UGa-CCCGGCUGcac -5'
11107 5' -59.1 NC_002794.1 + 106324 0.68 0.737786
Target:  5'- aCGCGCGCgaCGGGUcgacgguucGCcGGGUCGACGg- -3'
miRNA:   3'- -GCGCGUG--GCUCA---------UGaCCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 65170 0.68 0.747085
Target:  5'- cCGUgGCGCCGAGaccgGCgGGuGCCGGCGa- -3'
miRNA:   3'- -GCG-CGUGGCUCa---UGaCC-CGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 102057 0.68 0.756292
Target:  5'- gCGCGCuucuucgaGCCGGGcgaccUGCcgcGGGCCGACGa- -3'
miRNA:   3'- -GCGCG--------UGGCUC-----AUGa--CCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 157662 0.68 0.765398
Target:  5'- cCGaCGCGCUGGcGgcUUGGGCCGcuugGCGUGc -3'
miRNA:   3'- -GC-GCGUGGCU-CauGACCCGGC----UGCAC- -5'
11107 5' -59.1 NC_002794.1 + 41274 0.68 0.777963
Target:  5'- uCGCGCuCCGAGaacgGCggcggcuccgacgcGGGCCG-CGUGg -3'
miRNA:   3'- -GCGCGuGGCUCa---UGa-------------CCCGGCuGCAC- -5'
11107 5' -59.1 NC_002794.1 + 44222 0.68 0.774395
Target:  5'- uCGgGCGCCGAGgGCUcGGuGCCGGgCGg- -3'
miRNA:   3'- -GCgCGUGGCUCaUGA-CC-CGGCU-GCac -5'
11107 5' -59.1 NC_002794.1 + 101706 0.68 0.773501
Target:  5'- gGCGC-CCGAggacguguucgugGUGCacgUGGGCCagGGCGUGa -3'
miRNA:   3'- gCGCGuGGCU-------------CAUG---ACCCGG--CUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 188548 0.69 0.670787
Target:  5'- uCGCgGCGgCGGGUACUGcuGCCGcACGUGc -3'
miRNA:   3'- -GCG-CGUgGCUCAUGACc-CGGC-UGCAC- -5'
11107 5' -59.1 NC_002794.1 + 76556 0.69 0.670787
Target:  5'- uCGCGCGCCGGGUACUcacccGGCCcGCc-- -3'
miRNA:   3'- -GCGCGUGGCUCAUGAc----CCGGcUGcac -5'
11107 5' -59.1 NC_002794.1 + 94001 0.69 0.699829
Target:  5'- aCGCcgGCGCCGGcgGC-GGGCCGGCGg- -3'
miRNA:   3'- -GCG--CGUGGCUcaUGaCCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 112336 0.69 0.699829
Target:  5'- aGCGCGCCGGccgGC-GGcGCCGGCGg- -3'
miRNA:   3'- gCGCGUGGCUca-UGaCC-CGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 126602 0.69 0.718944
Target:  5'- --aGCGCCGAG-GCcGGcGCCGACGUc -3'
miRNA:   3'- gcgCGUGGCUCaUGaCC-CGGCUGCAc -5'
11107 5' -59.1 NC_002794.1 + 32576 0.69 0.670787
Target:  5'- uCGCGCGCgGcGGUGCcgGGGCCGGgGc- -3'
miRNA:   3'- -GCGCGUGgC-UCAUGa-CCCGGCUgCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.