Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11107 | 5' | -59.1 | NC_002794.1 | + | 88060 | 0.76 | 0.324586 |
Target: 5'- aCGCGCGCgCGAGgggGCgGGGCCGcgguuugaacgggGCGUGg -3' miRNA: 3'- -GCGCGUG-GCUCa--UGaCCCGGC-------------UGCAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 119688 | 0.75 | 0.369731 |
Target: 5'- gGCGUcuCCGGcUGCUGGGCCGGCGg- -3' miRNA: 3'- gCGCGu-GGCUcAUGACCCGGCUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 90953 | 0.74 | 0.393457 |
Target: 5'- uGUGCGCCGAGgcCcGGGCCcgcuucGGCGUGg -3' miRNA: 3'- gCGCGUGGCUCauGaCCCGG------CUGCAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 40524 | 0.72 | 0.525418 |
Target: 5'- cCGaCGCGCCGAcGggagACgaggGGGCCGGCGg- -3' miRNA: 3'- -GC-GCGUGGCU-Ca---UGa---CCCGGCUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 48030 | 0.72 | 0.506722 |
Target: 5'- gGCGUcacgccggacGCCGAGUgcguGCUGGGCaCGGCGcUGa -3' miRNA: 3'- gCGCG----------UGGCUCA----UGACCCG-GCUGC-AC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 145920 | 0.72 | 0.534863 |
Target: 5'- -cCGCGCCGAGcggagGGGCCGGCGa- -3' miRNA: 3'- gcGCGUGGCUCauga-CCCGGCUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 122985 | 0.72 | 0.534863 |
Target: 5'- aCGCGCGCCuGGUGC-GGGCCgugcuGACGg- -3' miRNA: 3'- -GCGCGUGGcUCAUGaCCCGG-----CUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 191285 | 0.72 | 0.543415 |
Target: 5'- gGCGagacaccacacCACCGAGacacggaUGCgagGGGCCGGCGUGc -3' miRNA: 3'- gCGC-----------GUGGCUC-------AUGa--CCCGGCUGCAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 99560 | 0.7 | 0.616032 |
Target: 5'- gCGCGCGCCcuccgcgggcgagggGGGUGCggaGGGCgCGGCGg- -3' miRNA: 3'- -GCGCGUGG---------------CUCAUGa--CCCG-GCUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 102183 | 0.7 | 0.631694 |
Target: 5'- gCGCGCGgCGAGgacCUGgcGGCCGcCGUGa -3' miRNA: 3'- -GCGCGUgGCUCau-GAC--CCGGCuGCAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 14603 | 0.7 | 0.621903 |
Target: 5'- aGCGCGCCGGGcaccGCgacgGGGCCggaGACGg- -3' miRNA: 3'- gCGCGUGGCUCa---UGa---CCCGG---CUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 153420 | 0.7 | 0.641484 |
Target: 5'- cCGCGCGCgGAGccgaGCUGGGCgugGACGa- -3' miRNA: 3'- -GCGCGUGgCUCa---UGACCCGg--CUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 76556 | 0.69 | 0.670787 |
Target: 5'- uCGCGCGCCGGGUACUcacccGGCCcGCc-- -3' miRNA: 3'- -GCGCGUGGCUCAUGAc----CCGGcUGcac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 94001 | 0.69 | 0.699829 |
Target: 5'- aCGCcgGCGCCGGcgGC-GGGCCGGCGg- -3' miRNA: 3'- -GCG--CGUGGCUcaUGaCCCGGCUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 126602 | 0.69 | 0.718944 |
Target: 5'- --aGCGCCGAG-GCcGGcGCCGACGUc -3' miRNA: 3'- gcgCGUGGCUCaUGaCC-CGGCUGCAc -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 134962 | 0.69 | 0.722736 |
Target: 5'- cCGCGCgaccccugcuuccacGCCGccuccugACggaggGGGCCGACGUGa -3' miRNA: 3'- -GCGCG---------------UGGCuca----UGa----CCCGGCUGCAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 32576 | 0.69 | 0.670787 |
Target: 5'- uCGCGCGCgGcGGUGCcgGGGCCGGgGc- -3' miRNA: 3'- -GCGCGUGgC-UCAUGa-CCCGGCUgCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 112336 | 0.69 | 0.699829 |
Target: 5'- aGCGCGCCGGccgGC-GGcGCCGGCGg- -3' miRNA: 3'- gCGCGUGGCUca-UGaCC-CGGCUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 188548 | 0.69 | 0.670787 |
Target: 5'- uCGCgGCGgCGGGUACUGcuGCCGcACGUGc -3' miRNA: 3'- -GCG-CGUgGCUCAUGACc-CGGC-UGCAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 106324 | 0.68 | 0.737786 |
Target: 5'- aCGCGCGCgaCGGGUcgacgguucGCcGGGUCGACGg- -3' miRNA: 3'- -GCGCGUG--GCUCA---------UGaCCCGGCUGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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