miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11107 5' -59.1 NC_002794.1 + 88060 0.76 0.324586
Target:  5'- aCGCGCGCgCGAGgggGCgGGGCCGcgguuugaacgggGCGUGg -3'
miRNA:   3'- -GCGCGUG-GCUCa--UGaCCCGGC-------------UGCAC- -5'
11107 5' -59.1 NC_002794.1 + 119688 0.75 0.369731
Target:  5'- gGCGUcuCCGGcUGCUGGGCCGGCGg- -3'
miRNA:   3'- gCGCGu-GGCUcAUGACCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 90953 0.74 0.393457
Target:  5'- uGUGCGCCGAGgcCcGGGCCcgcuucGGCGUGg -3'
miRNA:   3'- gCGCGUGGCUCauGaCCCGG------CUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 48030 0.72 0.506722
Target:  5'- gGCGUcacgccggacGCCGAGUgcguGCUGGGCaCGGCGcUGa -3'
miRNA:   3'- gCGCG----------UGGCUCA----UGACCCG-GCUGC-AC- -5'
11107 5' -59.1 NC_002794.1 + 40524 0.72 0.525418
Target:  5'- cCGaCGCGCCGAcGggagACgaggGGGCCGGCGg- -3'
miRNA:   3'- -GC-GCGUGGCU-Ca---UGa---CCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 145920 0.72 0.534863
Target:  5'- -cCGCGCCGAGcggagGGGCCGGCGa- -3'
miRNA:   3'- gcGCGUGGCUCauga-CCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 122985 0.72 0.534863
Target:  5'- aCGCGCGCCuGGUGC-GGGCCgugcuGACGg- -3'
miRNA:   3'- -GCGCGUGGcUCAUGaCCCGG-----CUGCac -5'
11107 5' -59.1 NC_002794.1 + 191285 0.72 0.543415
Target:  5'- gGCGagacaccacacCACCGAGacacggaUGCgagGGGCCGGCGUGc -3'
miRNA:   3'- gCGC-----------GUGGCUC-------AUGa--CCCGGCUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 99560 0.7 0.616032
Target:  5'- gCGCGCGCCcuccgcgggcgagggGGGUGCggaGGGCgCGGCGg- -3'
miRNA:   3'- -GCGCGUGG---------------CUCAUGa--CCCG-GCUGCac -5'
11107 5' -59.1 NC_002794.1 + 14603 0.7 0.621903
Target:  5'- aGCGCGCCGGGcaccGCgacgGGGCCggaGACGg- -3'
miRNA:   3'- gCGCGUGGCUCa---UGa---CCCGG---CUGCac -5'
11107 5' -59.1 NC_002794.1 + 102183 0.7 0.631694
Target:  5'- gCGCGCGgCGAGgacCUGgcGGCCGcCGUGa -3'
miRNA:   3'- -GCGCGUgGCUCau-GAC--CCGGCuGCAC- -5'
11107 5' -59.1 NC_002794.1 + 153420 0.7 0.641484
Target:  5'- cCGCGCGCgGAGccgaGCUGGGCgugGACGa- -3'
miRNA:   3'- -GCGCGUGgCUCa---UGACCCGg--CUGCac -5'
11107 5' -59.1 NC_002794.1 + 32576 0.69 0.670787
Target:  5'- uCGCGCGCgGcGGUGCcgGGGCCGGgGc- -3'
miRNA:   3'- -GCGCGUGgC-UCAUGa-CCCGGCUgCac -5'
11107 5' -59.1 NC_002794.1 + 76556 0.69 0.670787
Target:  5'- uCGCGCGCCGGGUACUcacccGGCCcGCc-- -3'
miRNA:   3'- -GCGCGUGGCUCAUGAc----CCGGcUGcac -5'
11107 5' -59.1 NC_002794.1 + 188548 0.69 0.670787
Target:  5'- uCGCgGCGgCGGGUACUGcuGCCGcACGUGc -3'
miRNA:   3'- -GCG-CGUgGCUCAUGACc-CGGC-UGCAC- -5'
11107 5' -59.1 NC_002794.1 + 112336 0.69 0.699829
Target:  5'- aGCGCGCCGGccgGC-GGcGCCGGCGg- -3'
miRNA:   3'- gCGCGUGGCUca-UGaCC-CGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 94001 0.69 0.699829
Target:  5'- aCGCcgGCGCCGGcgGC-GGGCCGGCGg- -3'
miRNA:   3'- -GCG--CGUGGCUcaUGaCCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 126602 0.69 0.718944
Target:  5'- --aGCGCCGAG-GCcGGcGCCGACGUc -3'
miRNA:   3'- gcgCGUGGCUCaUGaCC-CGGCUGCAc -5'
11107 5' -59.1 NC_002794.1 + 134962 0.69 0.722736
Target:  5'- cCGCGCgaccccugcuuccacGCCGccuccugACggaggGGGCCGACGUGa -3'
miRNA:   3'- -GCGCG---------------UGGCuca----UGa----CCCGGCUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 114669 0.68 0.725573
Target:  5'- gCGCGCGCCG-GUACUcggaccgcaGGGCCcggaccuccugcgaGACGg- -3'
miRNA:   3'- -GCGCGUGGCuCAUGA---------CCCGG--------------CUGCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.