miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11107 5' -59.1 NC_002794.1 + 100810 0.68 0.728403
Target:  5'- uGCGCcuacguGCCGGGcgGCggGGGCCGGCa-- -3'
miRNA:   3'- gCGCG------UGGCUCa-UGa-CCCGGCUGcac -5'
11107 5' -59.1 NC_002794.1 + 102519 0.68 0.728403
Target:  5'- gCGCGCGCgCGGG-ACgaccucuucucGGGCCG-CGUGg -3'
miRNA:   3'- -GCGCGUG-GCUCaUGa----------CCCGGCuGCAC- -5'
11107 5' -59.1 NC_002794.1 + 106324 0.68 0.737786
Target:  5'- aCGCGCGCgaCGGGUcgacgguucGCcGGGUCGACGg- -3'
miRNA:   3'- -GCGCGUG--GCUCA---------UGaCCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 65170 0.68 0.747085
Target:  5'- cCGUgGCGCCGAGaccgGCgGGuGCCGGCGa- -3'
miRNA:   3'- -GCG-CGUGGCUCa---UGaCC-CGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 130497 0.68 0.747085
Target:  5'- gGCGCAgCGAGUgcgccucgcccACUcgagcGGGCUGACcGUGa -3'
miRNA:   3'- gCGCGUgGCUCA-----------UGA-----CCCGGCUG-CAC- -5'
11107 5' -59.1 NC_002794.1 + 102057 0.68 0.756292
Target:  5'- gCGCGCuucuucgaGCCGGGcgaccUGCcgcGGGCCGACGa- -3'
miRNA:   3'- -GCGCG--------UGGCUC-----AUGa--CCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 157662 0.68 0.765398
Target:  5'- cCGaCGCGCUGGcGgcUUGGGCCGcuugGCGUGc -3'
miRNA:   3'- -GC-GCGUGGCU-CauGACCCGGC----UGCAC- -5'
11107 5' -59.1 NC_002794.1 + 101706 0.68 0.773501
Target:  5'- gGCGC-CCGAggacguguucgugGUGCacgUGGGCCagGGCGUGa -3'
miRNA:   3'- gCGCGuGGCU-------------CAUG---ACCCGG--CUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 44222 0.68 0.774395
Target:  5'- uCGgGCGCCGAGgGCUcGGuGCCGGgCGg- -3'
miRNA:   3'- -GCgCGUGGCUCaUGA-CC-CGGCU-GCac -5'
11107 5' -59.1 NC_002794.1 + 41274 0.68 0.777963
Target:  5'- uCGCGCuCCGAGaacgGCggcggcuccgacgcGGGCCG-CGUGg -3'
miRNA:   3'- -GCGCGuGGCUCa---UGa-------------CCCGGCuGCAC- -5'
11107 5' -59.1 NC_002794.1 + 91109 0.67 0.783277
Target:  5'- uGUaCGCCGGGcaGCUGGuGCCGuGCGUGg -3'
miRNA:   3'- gCGcGUGGCUCa-UGACC-CGGC-UGCAC- -5'
11107 5' -59.1 NC_002794.1 + 14774 0.67 0.783277
Target:  5'- gGC-CGCUGAGgccgGC-GaGGCCGGCGUGa -3'
miRNA:   3'- gCGcGUGGCUCa---UGaC-CCGGCUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 143019 0.67 0.783277
Target:  5'- aGCGUGCgGucgGCcGGGUCGACGUGc -3'
miRNA:   3'- gCGCGUGgCucaUGaCCCGGCUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 57094 0.67 0.783277
Target:  5'- uGCGCACCGucaAGaACacGGCCGACGc- -3'
miRNA:   3'- gCGCGUGGC---UCaUGacCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 90361 0.67 0.792034
Target:  5'- uGUGCACCGugcgcGUGCaGGGCCGGg--- -3'
miRNA:   3'- gCGCGUGGCu----CAUGaCCCGGCUgcac -5'
11107 5' -59.1 NC_002794.1 + 71208 0.67 0.795501
Target:  5'- gCGUGCucgucgaaggucccgGCCGcGUAgUGgcGGCCGGCGUGg -3'
miRNA:   3'- -GCGCG---------------UGGCuCAUgAC--CCGGCUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 106909 0.67 0.804071
Target:  5'- gGCGCugcuGCgCGAGUugUauuugaaaaagacgcGGGCCGGCGg- -3'
miRNA:   3'- gCGCG----UG-GCUCAugA---------------CCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 190134 0.67 0.809145
Target:  5'- cCGCGCGCCGAuaccacgcGUACUGcuGG-CGGCGg- -3'
miRNA:   3'- -GCGCGUGGCU--------CAUGAC--CCgGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 103805 0.67 0.809145
Target:  5'- gGUGCGCCugcgACggcGGcGCCGACGUGg -3'
miRNA:   3'- gCGCGUGGcucaUGa--CC-CGGCUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 34783 0.67 0.817484
Target:  5'- cCGCGCcaGCCGAGUcggccgaaccgGCccGGGCCGcGCGa- -3'
miRNA:   3'- -GCGCG--UGGCUCA-----------UGa-CCCGGC-UGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.