miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11107 5' -59.1 NC_002794.1 + 864 0.66 0.864047
Target:  5'- gCGCGCGCCcgcGAGgc---GGUCGGCGUGc -3'
miRNA:   3'- -GCGCGUGG---CUCaugacCCGGCUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 14603 0.7 0.621903
Target:  5'- aGCGCGCCGGGcaccGCgacgGGGCCggaGACGg- -3'
miRNA:   3'- gCGCGUGGCUCa---UGa---CCCGG---CUGCac -5'
11107 5' -59.1 NC_002794.1 + 14774 0.67 0.783277
Target:  5'- gGC-CGCUGAGgccgGC-GaGGCCGGCGUGa -3'
miRNA:   3'- gCGcGUGGCUCa---UGaC-CCGGCUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 32576 0.69 0.670787
Target:  5'- uCGCGCGCgGcGGUGCcgGGGCCGGgGc- -3'
miRNA:   3'- -GCGCGUGgC-UCAUGa-CCCGGCUgCac -5'
11107 5' -59.1 NC_002794.1 + 34783 0.67 0.817484
Target:  5'- cCGCGCcaGCCGAGUcggccgaaccgGCccGGGCCGcGCGa- -3'
miRNA:   3'- -GCGCG--UGGCUCA-----------UGa-CCCGGC-UGCac -5'
11107 5' -59.1 NC_002794.1 + 40524 0.72 0.525418
Target:  5'- cCGaCGCGCCGAcGggagACgaggGGGCCGGCGg- -3'
miRNA:   3'- -GC-GCGUGGCU-Ca---UGa---CCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 41274 0.68 0.777963
Target:  5'- uCGCGCuCCGAGaacgGCggcggcuccgacgcGGGCCG-CGUGg -3'
miRNA:   3'- -GCGCGuGGCUCa---UGa-------------CCCGGCuGCAC- -5'
11107 5' -59.1 NC_002794.1 + 44222 0.68 0.774395
Target:  5'- uCGgGCGCCGAGgGCUcGGuGCCGGgCGg- -3'
miRNA:   3'- -GCgCGUGGCUCaUGA-CC-CGGCU-GCac -5'
11107 5' -59.1 NC_002794.1 + 44348 0.66 0.832897
Target:  5'- gGCGCcggcgagACCGAGaGCgcggcGGGCgCGACGUc -3'
miRNA:   3'- gCGCG-------UGGCUCaUGa----CCCG-GCUGCAc -5'
11107 5' -59.1 NC_002794.1 + 48030 0.72 0.506722
Target:  5'- gGCGUcacgccggacGCCGAGUgcguGCUGGGCaCGGCGcUGa -3'
miRNA:   3'- gCGCG----------UGGCUCA----UGACCCG-GCUGC-AC- -5'
11107 5' -59.1 NC_002794.1 + 57094 0.67 0.783277
Target:  5'- uGCGCACCGucaAGaACacGGCCGACGc- -3'
miRNA:   3'- gCGCGUGGC---UCaUGacCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 63066 0.66 0.841548
Target:  5'- -cCGCGgCGAGcucCUGGGCCGGCuGUa -3'
miRNA:   3'- gcGCGUgGCUCau-GACCCGGCUG-CAc -5'
11107 5' -59.1 NC_002794.1 + 65127 0.66 0.833692
Target:  5'- gCGCGCcuguCCGAGcuccucggcgACUGGGUCGcCGUc -3'
miRNA:   3'- -GCGCGu---GGCUCa---------UGACCCGGCuGCAc -5'
11107 5' -59.1 NC_002794.1 + 65170 0.68 0.747085
Target:  5'- cCGUgGCGCCGAGaccgGCgGGuGCCGGCGa- -3'
miRNA:   3'- -GCG-CGUGGCUCa---UGaCC-CGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 71208 0.67 0.795501
Target:  5'- gCGUGCucgucgaaggucccgGCCGcGUAgUGgcGGCCGGCGUGg -3'
miRNA:   3'- -GCGCG---------------UGGCuCAUgAC--CCGGCUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 71784 0.66 0.841548
Target:  5'- uCGCGCGgCGAGUcgccccccgGC-GGGCgCGGCGa- -3'
miRNA:   3'- -GCGCGUgGCUCA---------UGaCCCG-GCUGCac -5'
11107 5' -59.1 NC_002794.1 + 74768 0.66 0.855246
Target:  5'- aGCGCGCucguCGAGUACgacgaggucaaaGGGuuGACGg- -3'
miRNA:   3'- gCGCGUG----GCUCAUGa-----------CCCggCUGCac -5'
11107 5' -59.1 NC_002794.1 + 76556 0.69 0.670787
Target:  5'- uCGCGCGCCGGGUACUcacccGGCCcGCc-- -3'
miRNA:   3'- -GCGCGUGGCUCAUGAc----CCGGcUGcac -5'
11107 5' -59.1 NC_002794.1 + 80569 0.67 0.825669
Target:  5'- cCGCGCcguGCCGAcGcAC-GGGCUGACGg- -3'
miRNA:   3'- -GCGCG---UGGCU-CaUGaCCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 88060 0.76 0.324586
Target:  5'- aCGCGCGCgCGAGgggGCgGGGCCGcgguuugaacgggGCGUGg -3'
miRNA:   3'- -GCGCGUG-GCUCa--UGaCCCGGC-------------UGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.