miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11107 5' -59.1 NC_002794.1 + 90361 0.67 0.792034
Target:  5'- uGUGCACCGugcgcGUGCaGGGCCGGg--- -3'
miRNA:   3'- gCGCGUGGCu----CAUGaCCCGGCUgcac -5'
11107 5' -59.1 NC_002794.1 + 90953 0.74 0.393457
Target:  5'- uGUGCGCCGAGgcCcGGGCCcgcuucGGCGUGg -3'
miRNA:   3'- gCGCGUGGCUCauGaCCCGG------CUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 91109 0.67 0.783277
Target:  5'- uGUaCGCCGGGcaGCUGGuGCCGuGCGUGg -3'
miRNA:   3'- gCGcGUGGCUCa-UGACC-CGGC-UGCAC- -5'
11107 5' -59.1 NC_002794.1 + 92627 0.66 0.862599
Target:  5'- gGCGCACC-AGUACUaccGGGCCuucuuccucauCGUGc -3'
miRNA:   3'- gCGCGUGGcUCAUGA---CCCGGcu---------GCAC- -5'
11107 5' -59.1 NC_002794.1 + 94001 0.69 0.699829
Target:  5'- aCGCcgGCGCCGGcgGC-GGGCCGGCGg- -3'
miRNA:   3'- -GCG--CGUGGCUcaUGaCCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 99560 0.7 0.616032
Target:  5'- gCGCGCGCCcuccgcgggcgagggGGGUGCggaGGGCgCGGCGg- -3'
miRNA:   3'- -GCGCGUGG---------------CUCAUGa--CCCG-GCUGCac -5'
11107 5' -59.1 NC_002794.1 + 100810 0.68 0.728403
Target:  5'- uGCGCcuacguGCCGGGcgGCggGGGCCGGCa-- -3'
miRNA:   3'- gCGCG------UGGCUCa-UGa-CCCGGCUGcac -5'
11107 5' -59.1 NC_002794.1 + 101030 0.67 0.825669
Target:  5'- aCGCGgGCCGGGcGC-GGGUCGGCc-- -3'
miRNA:   3'- -GCGCgUGGCUCaUGaCCCGGCUGcac -5'
11107 5' -59.1 NC_002794.1 + 101706 0.68 0.773501
Target:  5'- gGCGC-CCGAggacguguucgugGUGCacgUGGGCCagGGCGUGa -3'
miRNA:   3'- gCGCGuGGCU-------------CAUG---ACCCGG--CUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 101775 0.66 0.84923
Target:  5'- cCGCGCGuccauccuguCCGAGUGCUGcGCCGcUGg- -3'
miRNA:   3'- -GCGCGU----------GGCUCAUGACcCGGCuGCac -5'
11107 5' -59.1 NC_002794.1 + 102057 0.68 0.756292
Target:  5'- gCGCGCuucuucgaGCCGGGcgaccUGCcgcGGGCCGACGa- -3'
miRNA:   3'- -GCGCG--------UGGCUC-----AUGa--CCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 102183 0.7 0.631694
Target:  5'- gCGCGCGgCGAGgacCUGgcGGCCGcCGUGa -3'
miRNA:   3'- -GCGCGUgGCUCau-GAC--CCGGCuGCAC- -5'
11107 5' -59.1 NC_002794.1 + 102519 0.68 0.728403
Target:  5'- gCGCGCGCgCGGG-ACgaccucuucucGGGCCG-CGUGg -3'
miRNA:   3'- -GCGCGUG-GCUCaUGa----------CCCGGCuGCAC- -5'
11107 5' -59.1 NC_002794.1 + 103805 0.67 0.809145
Target:  5'- gGUGCGCCugcgACggcGGcGCCGACGUGg -3'
miRNA:   3'- gCGCGUGGcucaUGa--CC-CGGCUGCAC- -5'
11107 5' -59.1 NC_002794.1 + 106324 0.68 0.737786
Target:  5'- aCGCGCGCgaCGGGUcgacgguucGCcGGGUCGACGg- -3'
miRNA:   3'- -GCGCGUG--GCUCA---------UGaCCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 106909 0.67 0.804071
Target:  5'- gGCGCugcuGCgCGAGUugUauuugaaaaagacgcGGGCCGGCGg- -3'
miRNA:   3'- gCGCG----UG-GCUCAugA---------------CCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 112336 0.69 0.699829
Target:  5'- aGCGCGCCGGccgGC-GGcGCCGGCGg- -3'
miRNA:   3'- gCGCGUGGCUca-UGaCC-CGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 114669 0.68 0.725573
Target:  5'- gCGCGCGCCG-GUACUcggaccgcaGGGCCcggaccuccugcgaGACGg- -3'
miRNA:   3'- -GCGCGUGGCuCAUGA---------CCCGG--------------CUGCac -5'
11107 5' -59.1 NC_002794.1 + 119688 0.75 0.369731
Target:  5'- gGCGUcuCCGGcUGCUGGGCCGGCGg- -3'
miRNA:   3'- gCGCGu-GGCUcAUGACCCGGCUGCac -5'
11107 5' -59.1 NC_002794.1 + 122985 0.72 0.534863
Target:  5'- aCGCGCGCCuGGUGC-GGGCCgugcuGACGg- -3'
miRNA:   3'- -GCGCGUGGcUCAUGaCCCGG-----CUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.