Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11107 | 5' | -59.1 | NC_002794.1 | + | 191285 | 0.72 | 0.543415 |
Target: 5'- gGCGagacaccacacCACCGAGacacggaUGCgagGGGCCGGCGUGc -3' miRNA: 3'- gCGC-----------GUGGCUC-------AUGa--CCCGGCUGCAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 190134 | 0.67 | 0.809145 |
Target: 5'- cCGCGCGCCGAuaccacgcGUACUGcuGG-CGGCGg- -3' miRNA: 3'- -GCGCGUGGCU--------CAUGAC--CCgGCUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 188548 | 0.69 | 0.670787 |
Target: 5'- uCGCgGCGgCGGGUACUGcuGCCGcACGUGc -3' miRNA: 3'- -GCG-CGUgGCUCAUGACc-CGGC-UGCAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 185350 | 0.66 | 0.856731 |
Target: 5'- uCGCGCGCCGcc-GCgagcGGGCCGaACGc- -3' miRNA: 3'- -GCGCGUGGCucaUGa---CCCGGC-UGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 162503 | 0.66 | 0.864047 |
Target: 5'- uCGCGUacguggcaGCUGGGUAuCUGGGCUuggguuuuuuggGugGUGa -3' miRNA: 3'- -GCGCG--------UGGCUCAU-GACCCGG------------CugCAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 157662 | 0.68 | 0.765398 |
Target: 5'- cCGaCGCGCUGGcGgcUUGGGCCGcuugGCGUGc -3' miRNA: 3'- -GC-GCGUGGCU-CauGACCCGGC----UGCAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 153420 | 0.7 | 0.641484 |
Target: 5'- cCGCGCGCgGAGccgaGCUGGGCgugGACGa- -3' miRNA: 3'- -GCGCGUGgCUCa---UGACCCGg--CUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 145920 | 0.72 | 0.534863 |
Target: 5'- -cCGCGCCGAGcggagGGGCCGGCGa- -3' miRNA: 3'- gcGCGUGGCUCauga-CCCGGCUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 143019 | 0.67 | 0.783277 |
Target: 5'- aGCGUGCgGucgGCcGGGUCGACGUGc -3' miRNA: 3'- gCGCGUGgCucaUGaCCCGGCUGCAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 134962 | 0.69 | 0.722736 |
Target: 5'- cCGCGCgaccccugcuuccacGCCGccuccugACggaggGGGCCGACGUGa -3' miRNA: 3'- -GCGCG---------------UGGCuca----UGa----CCCGGCUGCAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 130497 | 0.68 | 0.747085 |
Target: 5'- gGCGCAgCGAGUgcgccucgcccACUcgagcGGGCUGACcGUGa -3' miRNA: 3'- gCGCGUgGCUCA-----------UGA-----CCCGGCUG-CAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 126602 | 0.69 | 0.718944 |
Target: 5'- --aGCGCCGAG-GCcGGcGCCGACGUc -3' miRNA: 3'- gcgCGUGGCUCaUGaCC-CGGCUGCAc -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 126381 | 0.66 | 0.841548 |
Target: 5'- uGgGCGCCGGGgcCUGcGcGgCGGCGUGc -3' miRNA: 3'- gCgCGUGGCUCauGAC-C-CgGCUGCAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 122985 | 0.72 | 0.534863 |
Target: 5'- aCGCGCGCCuGGUGC-GGGCCgugcuGACGg- -3' miRNA: 3'- -GCGCGUGGcUCAUGaCCCGG-----CUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 119688 | 0.75 | 0.369731 |
Target: 5'- gGCGUcuCCGGcUGCUGGGCCGGCGg- -3' miRNA: 3'- gCGCGu-GGCUcAUGACCCGGCUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 114669 | 0.68 | 0.725573 |
Target: 5'- gCGCGCGCCG-GUACUcggaccgcaGGGCCcggaccuccugcgaGACGg- -3' miRNA: 3'- -GCGCGUGGCuCAUGA---------CCCGG--------------CUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 112336 | 0.69 | 0.699829 |
Target: 5'- aGCGCGCCGGccgGC-GGcGCCGGCGg- -3' miRNA: 3'- gCGCGUGGCUca-UGaCC-CGGCUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 106909 | 0.67 | 0.804071 |
Target: 5'- gGCGCugcuGCgCGAGUugUauuugaaaaagacgcGGGCCGGCGg- -3' miRNA: 3'- gCGCG----UG-GCUCAugA---------------CCCGGCUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 106324 | 0.68 | 0.737786 |
Target: 5'- aCGCGCGCgaCGGGUcgacgguucGCcGGGUCGACGg- -3' miRNA: 3'- -GCGCGUG--GCUCA---------UGaCCCGGCUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 103805 | 0.67 | 0.809145 |
Target: 5'- gGUGCGCCugcgACggcGGcGCCGACGUGg -3' miRNA: 3'- gCGCGUGGcucaUGa--CC-CGGCUGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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