Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11107 | 5' | -59.1 | NC_002794.1 | + | 101030 | 0.67 | 0.825669 |
Target: 5'- aCGCGgGCCGGGcGC-GGGUCGGCc-- -3' miRNA: 3'- -GCGCgUGGCUCaUGaCCCGGCUGcac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 44222 | 0.68 | 0.774395 |
Target: 5'- uCGgGCGCCGAGgGCUcGGuGCCGGgCGg- -3' miRNA: 3'- -GCgCGUGGCUCaUGA-CC-CGGCU-GCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 101706 | 0.68 | 0.773501 |
Target: 5'- gGCGC-CCGAggacguguucgugGUGCacgUGGGCCagGGCGUGa -3' miRNA: 3'- gCGCGuGGCU-------------CAUG---ACCCGG--CUGCAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 57094 | 0.67 | 0.783277 |
Target: 5'- uGCGCACCGucaAGaACacGGCCGACGc- -3' miRNA: 3'- gCGCGUGGC---UCaUGacCCGGCUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 143019 | 0.67 | 0.783277 |
Target: 5'- aGCGUGCgGucgGCcGGGUCGACGUGc -3' miRNA: 3'- gCGCGUGgCucaUGaCCCGGCUGCAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 91109 | 0.67 | 0.783277 |
Target: 5'- uGUaCGCCGGGcaGCUGGuGCCGuGCGUGg -3' miRNA: 3'- gCGcGUGGCUCa-UGACC-CGGC-UGCAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 71208 | 0.67 | 0.795501 |
Target: 5'- gCGUGCucgucgaaggucccgGCCGcGUAgUGgcGGCCGGCGUGg -3' miRNA: 3'- -GCGCG---------------UGGCuCAUgAC--CCGGCUGCAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 90361 | 0.67 | 0.792034 |
Target: 5'- uGUGCACCGugcgcGUGCaGGGCCGGg--- -3' miRNA: 3'- gCGCGUGGCu----CAUGaCCCGGCUgcac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 14774 | 0.67 | 0.783277 |
Target: 5'- gGC-CGCUGAGgccgGC-GaGGCCGGCGUGa -3' miRNA: 3'- gCGcGUGGCUCa---UGaC-CCGGCUGCAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 106909 | 0.67 | 0.804071 |
Target: 5'- gGCGCugcuGCgCGAGUugUauuugaaaaagacgcGGGCCGGCGg- -3' miRNA: 3'- gCGCG----UG-GCUCAugA---------------CCCGGCUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 190134 | 0.67 | 0.809145 |
Target: 5'- cCGCGCGCCGAuaccacgcGUACUGcuGG-CGGCGg- -3' miRNA: 3'- -GCGCGUGGCU--------CAUGAC--CCgGCUGCac -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 103805 | 0.67 | 0.809145 |
Target: 5'- gGUGCGCCugcgACggcGGcGCCGACGUGg -3' miRNA: 3'- gCGCGUGGcucaUGa--CC-CGGCUGCAC- -5' |
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11107 | 5' | -59.1 | NC_002794.1 | + | 162503 | 0.66 | 0.864047 |
Target: 5'- uCGCGUacguggcaGCUGGGUAuCUGGGCUuggguuuuuuggGugGUGa -3' miRNA: 3'- -GCGCG--------UGGCUCAU-GACCCGG------------CugCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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