miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11108 3' -55.4 NC_002794.1 + 48598 0.66 0.958717
Target:  5'- ---gGCGCGUCGCCgUCGgcguCGGcCUCa -3'
miRNA:   3'- uagaCGUGCAGCGG-AGCau--GUCaGGG- -5'
11108 3' -55.4 NC_002794.1 + 30678 0.66 0.958717
Target:  5'- gAUCUcGCACGUcCGgCggaCGUGCAcGUUCCg -3'
miRNA:   3'- -UAGA-CGUGCA-GCgGa--GCAUGU-CAGGG- -5'
11108 3' -55.4 NC_002794.1 + 189054 0.66 0.958717
Target:  5'- -gCUGCGCGUCGC---GUACGgcGUCUCg -3'
miRNA:   3'- uaGACGUGCAGCGgagCAUGU--CAGGG- -5'
11108 3' -55.4 NC_002794.1 + 104185 0.66 0.95499
Target:  5'- uAUUUGCGCGUagaGCCacaagCG-GCGGUCCa -3'
miRNA:   3'- -UAGACGUGCAg--CGGa----GCaUGUCAGGg -5'
11108 3' -55.4 NC_002794.1 + 13918 0.66 0.95499
Target:  5'- cUCUGCAcCGUCGCggCGUACAcgcuGUaCCa -3'
miRNA:   3'- uAGACGU-GCAGCGgaGCAUGU----CAgGG- -5'
11108 3' -55.4 NC_002794.1 + 106956 0.66 0.951042
Target:  5'- -cCUGgagacaCGCGUCGCCUCGcGCGGcggCCg -3'
miRNA:   3'- uaGAC------GUGCAGCGGAGCaUGUCa--GGg -5'
11108 3' -55.4 NC_002794.1 + 9567 0.66 0.94687
Target:  5'- gGUCUGguCGacacuuaGCC-CGUACccGGUCCCg -3'
miRNA:   3'- -UAGACguGCag-----CGGaGCAUG--UCAGGG- -5'
11108 3' -55.4 NC_002794.1 + 113028 0.66 0.945573
Target:  5'- uUCUGCGCGgcgcaUucauccgucaggcgCGCCUCGa--GGUCCCg -3'
miRNA:   3'- uAGACGUGC-----A--------------GCGGAGCaugUCAGGG- -5'
11108 3' -55.4 NC_002794.1 + 113262 0.66 0.942469
Target:  5'- ---aGCGCGUcCGCCcgcUCGgcCAGcUCCCg -3'
miRNA:   3'- uagaCGUGCA-GCGG---AGCauGUC-AGGG- -5'
11108 3' -55.4 NC_002794.1 + 147860 0.66 0.937837
Target:  5'- -cCUGgGCGUCGUCgc--GCAGUCCUc -3'
miRNA:   3'- uaGACgUGCAGCGGagcaUGUCAGGG- -5'
11108 3' -55.4 NC_002794.1 + 18062 0.66 0.937837
Target:  5'- -gCUGCACGcCGCCUgucUGUGCGuGUCg- -3'
miRNA:   3'- uaGACGUGCaGCGGA---GCAUGU-CAGgg -5'
11108 3' -55.4 NC_002794.1 + 138108 0.67 0.929945
Target:  5'- cGUCUGCAggagggcguggugcuCGUCGCCggucUCGggcgGCGGUUUCu -3'
miRNA:   3'- -UAGACGU---------------GCAGCGG----AGCa---UGUCAGGG- -5'
11108 3' -55.4 NC_002794.1 + 124388 0.67 0.916986
Target:  5'- gGUCgcggcgGCGCGUCGCCggUCGUcggggcGCcGUCCg -3'
miRNA:   3'- -UAGa-----CGUGCAGCGG--AGCA------UGuCAGGg -5'
11108 3' -55.4 NC_002794.1 + 182057 0.67 0.916986
Target:  5'- -cCUGCGCGUagggCGCCUgCGUcCGGUCggCCa -3'
miRNA:   3'- uaGACGUGCA----GCGGA-GCAuGUCAG--GG- -5'
11108 3' -55.4 NC_002794.1 + 113846 0.67 0.911191
Target:  5'- uUCUGCA----GCCUggCGUGCAGUUCCg -3'
miRNA:   3'- uAGACGUgcagCGGA--GCAUGUCAGGG- -5'
11108 3' -55.4 NC_002794.1 + 120851 0.67 0.910004
Target:  5'- -cCUGCGCGgccgucguccagCGCCUCGgcUGguGUCCg -3'
miRNA:   3'- uaGACGUGCa-----------GCGGAGC--AUguCAGGg -5'
11108 3' -55.4 NC_002794.1 + 76844 0.68 0.905165
Target:  5'- --aUGCGCGcCgGCCUCGU-CGG-CCCa -3'
miRNA:   3'- uagACGUGCaG-CGGAGCAuGUCaGGG- -5'
11108 3' -55.4 NC_002794.1 + 63124 0.68 0.878803
Target:  5'- cUCUGCAacuacCGcuUCGCCgaccgCGUGCAcUCCCa -3'
miRNA:   3'- uAGACGU-----GC--AGCGGa----GCAUGUcAGGG- -5'
11108 3' -55.4 NC_002794.1 + 153044 0.68 0.878803
Target:  5'- ---cGCGgGUC-CCUCGggcggACGGUCCCc -3'
miRNA:   3'- uagaCGUgCAGcGGAGCa----UGUCAGGG- -5'
11108 3' -55.4 NC_002794.1 + 61176 0.68 0.878803
Target:  5'- gAUCggcgGCugGUCG-CUCGUGCuG-CCCu -3'
miRNA:   3'- -UAGa---CGugCAGCgGAGCAUGuCaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.