miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11108 5' -56.5 NC_002794.1 + 182586 0.66 0.941505
Target:  5'- gCGGGcGACgaugGUCGCGuuGUCG-CGCa- -3'
miRNA:   3'- -GUUC-CUGa---CAGCGCggCAGCaGUGgu -5'
11108 5' -56.5 NC_002794.1 + 187436 0.66 0.936882
Target:  5'- gAAGGcCaGcCGCGCCGUCuGcCGCCGc -3'
miRNA:   3'- gUUCCuGaCaGCGCGGCAG-CaGUGGU- -5'
11108 5' -56.5 NC_002794.1 + 21953 0.66 0.936407
Target:  5'- gAAGG-CcGUCggccgcucccgcgGCGCCGUCGUCuCCGc -3'
miRNA:   3'- gUUCCuGaCAG-------------CGCGGCAGCAGuGGU- -5'
11108 5' -56.5 NC_002794.1 + 189858 0.66 0.932032
Target:  5'- --cGGAgCcGUCgGCGUCGUCGcCGCCGa -3'
miRNA:   3'- guuCCU-GaCAG-CGCGGCAGCaGUGGU- -5'
11108 5' -56.5 NC_002794.1 + 118166 0.66 0.932032
Target:  5'- uCAGGGugUcGUaggcggcgaCGCGCCGaccuucCGUCGCCGc -3'
miRNA:   3'- -GUUCCugA-CA---------GCGCGGCa-----GCAGUGGU- -5'
11108 5' -56.5 NC_002794.1 + 186366 0.66 0.926955
Target:  5'- cCAGccGCcGcCGcCGCCGUCGUCGCCGc -3'
miRNA:   3'- -GUUccUGaCaGC-GCGGCAGCAGUGGU- -5'
11108 5' -56.5 NC_002794.1 + 120023 0.66 0.926955
Target:  5'- uCGAGGAC--UCGCGgggaCGUCGUCAUg- -3'
miRNA:   3'- -GUUCCUGacAGCGCg---GCAGCAGUGgu -5'
11108 5' -56.5 NC_002794.1 + 53245 0.67 0.910358
Target:  5'- --cGGcCcGcCGCGCCGgCGUCGCCGc -3'
miRNA:   3'- guuCCuGaCaGCGCGGCaGCAGUGGU- -5'
11108 5' -56.5 NC_002794.1 + 134468 0.67 0.910358
Target:  5'- -cGGGACg---GCGCUcUCGUCGCCAg -3'
miRNA:   3'- guUCCUGacagCGCGGcAGCAGUGGU- -5'
11108 5' -56.5 NC_002794.1 + 158105 0.67 0.910358
Target:  5'- -uGGGGCgGUCGCGCCGUagcggGagACCc -3'
miRNA:   3'- guUCCUGaCAGCGCGGCAg----CagUGGu -5'
11108 5' -56.5 NC_002794.1 + 152225 0.67 0.904374
Target:  5'- --cGGAC-GUCGCGCgccaCGUCGcgcgCACCGu -3'
miRNA:   3'- guuCCUGaCAGCGCG----GCAGCa---GUGGU- -5'
11108 5' -56.5 NC_002794.1 + 119619 0.67 0.898166
Target:  5'- uCGAGGAacgucUCG-GCCGUCGUCAgCAc -3'
miRNA:   3'- -GUUCCUgac--AGCgCGGCAGCAGUgGU- -5'
11108 5' -56.5 NC_002794.1 + 58842 0.67 0.898166
Target:  5'- gCGAGGACgccGaCGUGCagcUCGUCGCCGa -3'
miRNA:   3'- -GUUCCUGa--CaGCGCGgc-AGCAGUGGU- -5'
11108 5' -56.5 NC_002794.1 + 115298 0.67 0.885094
Target:  5'- aCGGGGaccGCUG-CGcCGCCGUCcgcacgGUCGCCGc -3'
miRNA:   3'- -GUUCC---UGACaGC-GCGGCAG------CAGUGGU- -5'
11108 5' -56.5 NC_002794.1 + 151728 0.67 0.878235
Target:  5'- gAAGGACgucGUCG-GCCGcCgGUCGCCu -3'
miRNA:   3'- gUUCCUGa--CAGCgCGGCaG-CAGUGGu -5'
11108 5' -56.5 NC_002794.1 + 38690 0.67 0.878235
Target:  5'- aCGGGGucACcGcCGCGCCGUCGagCGCCc -3'
miRNA:   3'- -GUUCC--UGaCaGCGCGGCAGCa-GUGGu -5'
11108 5' -56.5 NC_002794.1 + 93723 0.68 0.856425
Target:  5'- ----uGCUGUUGCGCCGcUCG-CGCCGc -3'
miRNA:   3'- guuccUGACAGCGCGGC-AGCaGUGGU- -5'
11108 5' -56.5 NC_002794.1 + 23479 0.68 0.84091
Target:  5'- gAGGGGuCUGccaugaUCGCGCCGcCGUCucccgGCCAa -3'
miRNA:   3'- gUUCCU-GAC------AGCGCGGCaGCAG-----UGGU- -5'
11108 5' -56.5 NC_002794.1 + 118288 0.68 0.84091
Target:  5'- uCGGGGAC---CGCGCCGggcgCGUCGCUc -3'
miRNA:   3'- -GUUCCUGacaGCGCGGCa---GCAGUGGu -5'
11108 5' -56.5 NC_002794.1 + 120839 0.68 0.84091
Target:  5'- aCGGGGGCUaucccugCGCgGCCGUCGUCcagcGCCu -3'
miRNA:   3'- -GUUCCUGAca-----GCG-CGGCAGCAG----UGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.