miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11109 3' -53.5 NC_002794.1 + 34380 0.65 0.985261
Target:  5'- aACACggcggugGCCAacAGcuucUUCUCGCaguacgugcccgaCACCGCGCa -3'
miRNA:   3'- -UGUG-------UGGU--UCa---AAGAGCG-------------GUGGCGCG- -5'
11109 3' -53.5 NC_002794.1 + 138310 0.65 0.985088
Target:  5'- cGCACGCUgucggggaggAGGUcuucgagcgcucgcUUCUUGUCuuCCGCGCg -3'
miRNA:   3'- -UGUGUGG----------UUCA--------------AAGAGCGGu-GGCGCG- -5'
11109 3' -53.5 NC_002794.1 + 127495 0.66 0.984557
Target:  5'- -uGCGCCGGGaaaugCUCaggagcuggggcuguGCCGCCGCGa -3'
miRNA:   3'- ugUGUGGUUCaaa--GAG---------------CGGUGGCGCg -5'
11109 3' -53.5 NC_002794.1 + 102870 0.66 0.983827
Target:  5'- -uGCGCCGggaucGGUUUCUgGCCgACCugGUGCc -3'
miRNA:   3'- ugUGUGGU-----UCAAAGAgCGG-UGG--CGCG- -5'
11109 3' -53.5 NC_002794.1 + 56538 0.66 0.983827
Target:  5'- cGguCGCCAuccGGagcgCUCGCCGCCGCc- -3'
miRNA:   3'- -UguGUGGU---UCaaa-GAGCGGUGGCGcg -5'
11109 3' -53.5 NC_002794.1 + 99757 0.66 0.983827
Target:  5'- uCugGCCGAcGUUgC-CGCCGCC-CGCg -3'
miRNA:   3'- uGugUGGUU-CAAaGaGCGGUGGcGCG- -5'
11109 3' -53.5 NC_002794.1 + 130497 0.66 0.983827
Target:  5'- gGCGCAgCGAGUgcgcCUCGCcCACuCGaGCg -3'
miRNA:   3'- -UGUGUgGUUCAaa--GAGCG-GUG-GCgCG- -5'
11109 3' -53.5 NC_002794.1 + 186613 0.66 0.983827
Target:  5'- aACAuCGgCAGGUcUC-CGCCAgccgacacagcCCGCGCg -3'
miRNA:   3'- -UGU-GUgGUUCAaAGaGCGGU-----------GGCGCG- -5'
11109 3' -53.5 NC_002794.1 + 103937 0.66 0.983827
Target:  5'- aGCGCGCguGGccgccgccgCUCGCCAgCCGCcgGCg -3'
miRNA:   3'- -UGUGUGguUCaaa------GAGCGGU-GGCG--CG- -5'
11109 3' -53.5 NC_002794.1 + 117781 0.66 0.983827
Target:  5'- -aGCACCGGGUUcauggUC-CGCCGCaCGUucaGCa -3'
miRNA:   3'- ugUGUGGUUCAA-----AGaGCGGUG-GCG---CG- -5'
11109 3' -53.5 NC_002794.1 + 191520 0.66 0.983827
Target:  5'- -aGCGCCGGGcgUCggcccgCGCCucCCGcCGCa -3'
miRNA:   3'- ugUGUGGUUCaaAGa-----GCGGu-GGC-GCG- -5'
11109 3' -53.5 NC_002794.1 + 102020 0.66 0.981889
Target:  5'- cUACAUCGAGgcgcaUUUCGCCGagccggcguuccUCGCGCg -3'
miRNA:   3'- uGUGUGGUUCaa---AGAGCGGU------------GGCGCG- -5'
11109 3' -53.5 NC_002794.1 + 128550 0.66 0.981889
Target:  5'- -uGCGCCGuccugCUgGUCAUCGCGCu -3'
miRNA:   3'- ugUGUGGUucaaaGAgCGGUGGCGCG- -5'
11109 3' -53.5 NC_002794.1 + 59891 0.66 0.981889
Target:  5'- gGCGCACCug------CGCCGCgUGCGCa -3'
miRNA:   3'- -UGUGUGGuucaaagaGCGGUG-GCGCG- -5'
11109 3' -53.5 NC_002794.1 + 82886 0.66 0.981889
Target:  5'- uGCGCGCCucgcGUccgcCUCGCCGuCCGCcucGCg -3'
miRNA:   3'- -UGUGUGGuu--CAaa--GAGCGGU-GGCG---CG- -5'
11109 3' -53.5 NC_002794.1 + 109863 0.66 0.981889
Target:  5'- -gACACCAuaug-CUCGCuCGCCcGUGCu -3'
miRNA:   3'- ugUGUGGUucaaaGAGCG-GUGG-CGCG- -5'
11109 3' -53.5 NC_002794.1 + 106207 0.66 0.981889
Target:  5'- -aACGCCGuuAGUccaccgUCGCCgcgGCCGCGCu -3'
miRNA:   3'- ugUGUGGU--UCAaag---AGCGG---UGGCGCG- -5'
11109 3' -53.5 NC_002794.1 + 17482 0.66 0.981889
Target:  5'- cACACGCCGcGUUUgcgaUCGCCgacGCCG-GCc -3'
miRNA:   3'- -UGUGUGGUuCAAAg---AGCGG---UGGCgCG- -5'
11109 3' -53.5 NC_002794.1 + 149216 0.66 0.981889
Target:  5'- gGCugGCCGgaagcgAGgcgC-CGCCGCCGuCGCc -3'
miRNA:   3'- -UGugUGGU------UCaaaGaGCGGUGGC-GCG- -5'
11109 3' -53.5 NC_002794.1 + 178403 0.66 0.981889
Target:  5'- uGCAucguCGCUAAGcgUgUCGCacggACCGCGCg -3'
miRNA:   3'- -UGU----GUGGUUCaaAgAGCGg---UGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.