miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11109 5' -56.6 NC_002794.1 + 138744 0.66 0.940692
Target:  5'- gGUcCCCGGCCcuccgggggcCGAGUC-GCGGCGGu -3'
miRNA:   3'- -CGuGGGCCGGu---------GCUCAGaCGUUGUCc -5'
11109 5' -56.6 NC_002794.1 + 118015 0.66 0.940692
Target:  5'- aGCACCUGGCagGCGuAGaucagCUcCAGCAGGc -3'
miRNA:   3'- -CGUGGGCCGg-UGC-UCa----GAcGUUGUCC- -5'
11109 5' -56.6 NC_002794.1 + 136117 0.66 0.940692
Target:  5'- uGCACCUGGCgGgCGAaGUCgaagaggaggGCGaggACGGGg -3'
miRNA:   3'- -CGUGGGCCGgU-GCU-CAGa---------CGU---UGUCC- -5'
11109 5' -56.6 NC_002794.1 + 151912 0.66 0.940692
Target:  5'- -aGCCUGGCCGagcuccGUCUGCGGCGc- -3'
miRNA:   3'- cgUGGGCCGGUgcu---CAGACGUUGUcc -5'
11109 5' -56.6 NC_002794.1 + 49014 0.66 0.940692
Target:  5'- cGCGCCgcggCGGCCGCGGcGUCgucCGGCGcGGu -3'
miRNA:   3'- -CGUGG----GCCGGUGCU-CAGac-GUUGU-CC- -5'
11109 5' -56.6 NC_002794.1 + 101031 0.66 0.940692
Target:  5'- cGCgGgCCGGgCGCGGGUCggccgcuacUGCGuGCAGGa -3'
miRNA:   3'- -CG-UgGGCCgGUGCUCAG---------ACGU-UGUCC- -5'
11109 5' -56.6 NC_002794.1 + 96760 0.66 0.936045
Target:  5'- aGCGgCCGGCgGuCGAGUC-GCc-CGGGg -3'
miRNA:   3'- -CGUgGGCCGgU-GCUCAGaCGuuGUCC- -5'
11109 5' -56.6 NC_002794.1 + 44449 0.66 0.936045
Target:  5'- cGCGCCC-GCC-CGGacGUCgGCGGCGGa -3'
miRNA:   3'- -CGUGGGcCGGuGCU--CAGaCGUUGUCc -5'
11109 5' -56.6 NC_002794.1 + 188983 0.66 0.936045
Target:  5'- -aGCUCGGCCACcAGcCaGCGGCAGc -3'
miRNA:   3'- cgUGGGCCGGUGcUCaGaCGUUGUCc -5'
11109 5' -56.6 NC_002794.1 + 127471 0.66 0.936045
Target:  5'- --cCUCGGCCGCGAccaccgccGcUCUGCGcCGGGa -3'
miRNA:   3'- cguGGGCCGGUGCU--------C-AGACGUuGUCC- -5'
11109 5' -56.6 NC_002794.1 + 130999 0.66 0.931173
Target:  5'- uGCAauacguCCUGGCuCACGGGUCgguggucgUGCGGCGcGGc -3'
miRNA:   3'- -CGU------GGGCCG-GUGCUCAG--------ACGUUGU-CC- -5'
11109 5' -56.6 NC_002794.1 + 193056 0.66 0.931173
Target:  5'- aGCGCCCgcaccGGCUGCGGG-CcGUcGCGGGa -3'
miRNA:   3'- -CGUGGG-----CCGGUGCUCaGaCGuUGUCC- -5'
11109 5' -56.6 NC_002794.1 + 26643 0.66 0.931173
Target:  5'- cGCACCCGGaCgGCGGccggCUcGuCGGCGGGg -3'
miRNA:   3'- -CGUGGGCC-GgUGCUca--GA-C-GUUGUCC- -5'
11109 5' -56.6 NC_002794.1 + 34779 0.66 0.931173
Target:  5'- cCGCCCGcGCCAgcCGAGUCgGCcgAACcGGc -3'
miRNA:   3'- cGUGGGC-CGGU--GCUCAGaCG--UUGuCC- -5'
11109 5' -56.6 NC_002794.1 + 57503 0.66 0.931173
Target:  5'- cGCGCCCGccGCCuacgGCGAGUUcgUGCucAGCAaGGa -3'
miRNA:   3'- -CGUGGGC--CGG----UGCUCAG--ACG--UUGU-CC- -5'
11109 5' -56.6 NC_002794.1 + 123270 0.66 0.931173
Target:  5'- uGguCCgGGCCGCG-GUC-GUcGCGGGa -3'
miRNA:   3'- -CguGGgCCGGUGCuCAGaCGuUGUCC- -5'
11109 5' -56.6 NC_002794.1 + 71777 0.66 0.931173
Target:  5'- cGCGCCguCGcGCgGCGAGUCgcccccCGGCGGGc -3'
miRNA:   3'- -CGUGG--GC-CGgUGCUCAGac----GUUGUCC- -5'
11109 5' -56.6 NC_002794.1 + 185065 0.66 0.931173
Target:  5'- uGCAgCC-GCCGCGGcccGUCgccGUAGCAGGc -3'
miRNA:   3'- -CGUgGGcCGGUGCU---CAGa--CGUUGUCC- -5'
11109 5' -56.6 NC_002794.1 + 119132 0.66 0.930673
Target:  5'- -gGCCUGGCagGCGuucggguGGUCgcGCAGCAGGu -3'
miRNA:   3'- cgUGGGCCGg-UGC-------UCAGa-CGUUGUCC- -5'
11109 5' -56.6 NC_002794.1 + 183291 0.66 0.926075
Target:  5'- cGgAUCgGGCC-CGGcGUCUGgAACGGGc -3'
miRNA:   3'- -CgUGGgCCGGuGCU-CAGACgUUGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.