miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11111 3' -58.4 NC_002794.1 + 102864 0.66 0.888993
Target:  5'- gCGuGGUGcGCCGGGAuCGGUUucUgGCCGa -3'
miRNA:   3'- aGC-CCAC-CGGCUCU-GCCAGu-AgUGGU- -5'
11111 3' -58.4 NC_002794.1 + 63326 0.66 0.888993
Target:  5'- gCGGGgGGcCCGAGcgcggacCGGUCGcUCGCCc -3'
miRNA:   3'- aGCCCaCC-GGCUCu------GCCAGU-AGUGGu -5'
11111 3' -58.4 NC_002794.1 + 90976 0.66 0.887024
Target:  5'- uUCGGcGUggccucguaccgGGCCGAGGCGGagCGggccgacaccgacuUCACCGa -3'
miRNA:   3'- -AGCC-CA------------CCGGCUCUGCCa-GU--------------AGUGGU- -5'
11111 3' -58.4 NC_002794.1 + 154341 0.66 0.881683
Target:  5'- cCGGGUgccgcGGCCGAGcucccgcGCGGUCcagGCCGc -3'
miRNA:   3'- aGCCCA-----CCGGCUC-------UGCCAGuagUGGU- -5'
11111 3' -58.4 NC_002794.1 + 44742 0.66 0.875517
Target:  5'- cCGGaG-GGCUaAGACGGcgacUCGUCGCCGu -3'
miRNA:   3'- aGCC-CaCCGGcUCUGCC----AGUAGUGGU- -5'
11111 3' -58.4 NC_002794.1 + 43411 0.66 0.875517
Target:  5'- cCGGGcaGGuCCGGGACGG-CAcgACCAg -3'
miRNA:   3'- aGCCCa-CC-GGCUCUGCCaGUagUGGU- -5'
11111 3' -58.4 NC_002794.1 + 41180 0.66 0.875517
Target:  5'- cUCGcGGaGGCCGAG-CGucGUCGUCACg- -3'
miRNA:   3'- -AGC-CCaCCGGCUCuGC--CAGUAGUGgu -5'
11111 3' -58.4 NC_002794.1 + 101022 0.66 0.868475
Target:  5'- gUCGGGggacgcgGGCCGGGcGCGgGUCGgcCGCUAc -3'
miRNA:   3'- -AGCCCa------CCGGCUC-UGC-CAGUa-GUGGU- -5'
11111 3' -58.4 NC_002794.1 + 92480 0.66 0.866325
Target:  5'- cUCGGGccucaaccggugcgUGGaCGAGGCGGcCAUgGCCc -3'
miRNA:   3'- -AGCCC--------------ACCgGCUCUGCCaGUAgUGGu -5'
11111 3' -58.4 NC_002794.1 + 32597 0.66 0.861237
Target:  5'- cCGGGgccggGGCCGGGGcCGGggaUCGggccCGCCGa -3'
miRNA:   3'- aGCCCa----CCGGCUCU-GCC---AGUa---GUGGU- -5'
11111 3' -58.4 NC_002794.1 + 62053 0.66 0.861237
Target:  5'- gUC-GGUGGCCGAcgccGGCGG-CGaCGCCGg -3'
miRNA:   3'- -AGcCCACCGGCU----CUGCCaGUaGUGGU- -5'
11111 3' -58.4 NC_002794.1 + 149496 0.66 0.861237
Target:  5'- cUCGGGgauggGGauGGuGACGGggUCGUCGCCGg -3'
miRNA:   3'- -AGCCCa----CCggCU-CUGCC--AGUAGUGGU- -5'
11111 3' -58.4 NC_002794.1 + 185283 0.66 0.861237
Target:  5'- gUGGGccGCCG-GACaGGUCAgCACCAc -3'
miRNA:   3'- aGCCCacCGGCuCUG-CCAGUaGUGGU- -5'
11111 3' -58.4 NC_002794.1 + 49422 0.67 0.838397
Target:  5'- gCGGcGgcGGCCGucacggcguccGGcGCGGUCGUCGCCGu -3'
miRNA:   3'- aGCC-Ca-CCGGC-----------UC-UGCCAGUAGUGGU- -5'
11111 3' -58.4 NC_002794.1 + 110478 0.67 0.830428
Target:  5'- cUCGGGgGGUagaGAGGCGGUgGcggCGCCu -3'
miRNA:   3'- -AGCCCaCCGg--CUCUGCCAgUa--GUGGu -5'
11111 3' -58.4 NC_002794.1 + 134196 0.67 0.830428
Target:  5'- aUCGGcUGGUgGGGGCcGUCGgUCGCCAa -3'
miRNA:   3'- -AGCCcACCGgCUCUGcCAGU-AGUGGU- -5'
11111 3' -58.4 NC_002794.1 + 88745 0.67 0.822293
Target:  5'- cUCGGGgucGCCGAGGaauguggugccUGG-CGUCGCCGg -3'
miRNA:   3'- -AGCCCac-CGGCUCU-----------GCCaGUAGUGGU- -5'
11111 3' -58.4 NC_002794.1 + 91048 0.67 0.813997
Target:  5'- -gGGGUGGaCGGGGCGcgcGUCGUCAUg- -3'
miRNA:   3'- agCCCACCgGCUCUGC---CAGUAGUGgu -5'
11111 3' -58.4 NC_002794.1 + 140418 0.68 0.796954
Target:  5'- cUCGGGUGGCCGcGACGuaca--ACCGg -3'
miRNA:   3'- -AGCCCACCGGCuCUGCcaguagUGGU- -5'
11111 3' -58.4 NC_002794.1 + 144881 0.68 0.788223
Target:  5'- cUCGGGUgcgGGgCGAGACGcUCG-CGCCGc -3'
miRNA:   3'- -AGCCCA---CCgGCUCUGCcAGUaGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.