Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 131327 | 0.75 | 0.404332 |
Target: 5'- cUGGGUGGCCGGcucgcccgucguGACGGUUucgcccgugAUCACCGc -3' miRNA: 3'- aGCCCACCGGCU------------CUGCCAG---------UAGUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 128544 | 0.72 | 0.529313 |
Target: 5'- gUCGGGUGcGCCGuccuGcUGGUCAUCGCg- -3' miRNA: 3'- -AGCCCAC-CGGCu---CuGCCAGUAGUGgu -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 115141 | 0.72 | 0.529313 |
Target: 5'- gUCGGGUggaGGUCGGucACGGUCcgCACCAg -3' miRNA: 3'- -AGCCCA---CCGGCUc-UGCCAGuaGUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 37880 | 0.71 | 0.586238 |
Target: 5'- cUCGGGcGGCgGGGGCGGUgGcggcggcagcggcUCGCCGg -3' miRNA: 3'- -AGCCCaCCGgCUCUGCCAgU-------------AGUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 123410 | 0.71 | 0.593086 |
Target: 5'- gUCGGcGUGGaguacgacagcgaCGAGGCGGUgacCGUCGCCGa -3' miRNA: 3'- -AGCC-CACCg------------GCUCUGCCA---GUAGUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 140135 | 0.71 | 0.606818 |
Target: 5'- gCGGGUGGggaacgaCGAGGCGGUCG-CGCa- -3' miRNA: 3'- aGCCCACCg------GCUCUGCCAGUaGUGgu -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 142143 | 0.71 | 0.626491 |
Target: 5'- cCGGGUcacGGCgGAGGCGG-CGguagCACCGg -3' miRNA: 3'- aGCCCA---CCGgCUCUGCCaGUa---GUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 142653 | 0.71 | 0.626491 |
Target: 5'- gUCGGGUuuCC-AGACGGUCAUgGCCGc -3' miRNA: 3'- -AGCCCAccGGcUCUGCCAGUAgUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 116071 | 0.7 | 0.646179 |
Target: 5'- -gGGGUcGCgGAGcgcucggcgcgGCGGUCGUCGCCGg -3' miRNA: 3'- agCCCAcCGgCUC-----------UGCCAGUAGUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 123265 | 0.7 | 0.665826 |
Target: 5'- cCGGcUGGuCCGGGccGCGGUCGUCGCgGg -3' miRNA: 3'- aGCCcACC-GGCUC--UGCCAGUAGUGgU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 107000 | 0.7 | 0.685372 |
Target: 5'- gCGGcGcUGGCCGAcgcGACGGUgcUCACCGc -3' miRNA: 3'- aGCC-C-ACCGGCU---CUGCCAguAGUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 185187 | 0.7 | 0.695088 |
Target: 5'- gUCGGcGcGGUCGGcGCGGUCAUCGCg- -3' miRNA: 3'- -AGCC-CaCCGGCUcUGCCAGUAGUGgu -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 118252 | 0.69 | 0.714365 |
Target: 5'- gCGGGcuggaggucGGCCGGGGCGG-CggCGCCGg -3' miRNA: 3'- aGCCCa--------CCGGCUCUGCCaGuaGUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 138757 | 0.69 | 0.730549 |
Target: 5'- cCGGG-GGCCGAGucgcgGCGGUCgguggaggggagggGUCACgCAc -3' miRNA: 3'- aGCCCaCCGGCUC-----UGCCAG--------------UAGUG-GU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 191885 | 0.69 | 0.733383 |
Target: 5'- -gGGGcGGCgGAGGCGGgaUCggCACCGg -3' miRNA: 3'- agCCCaCCGgCUCUGCC--AGuaGUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 2285 | 0.69 | 0.742774 |
Target: 5'- aCGGGa-GCCGGGGCGuGUCAUaucCACCu -3' miRNA: 3'- aGCCCacCGGCUCUGC-CAGUA---GUGGu -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 110648 | 0.69 | 0.755769 |
Target: 5'- gUCGGGUuucuccggcGGCUGcAGACagugcagcacgcuguGGUCGUCGCCc -3' miRNA: 3'- -AGCCCA---------CCGGC-UCUG---------------CCAGUAGUGGu -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 592 | 0.68 | 0.760364 |
Target: 5'- cUCGGuccguucGUGGCCGGGuGCGGUCAggcgGCCc -3' miRNA: 3'- -AGCC-------CACCGGCUC-UGCCAGUag--UGGu -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 66015 | 0.68 | 0.761279 |
Target: 5'- cCGaGGcGGCC---GCGGUCGUCGCCGu -3' miRNA: 3'- aGC-CCaCCGGcucUGCCAGUAGUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 189660 | 0.68 | 0.761279 |
Target: 5'- cCGGcUGGCCGAG-CGGUCGcC-CCGg -3' miRNA: 3'- aGCCcACCGGCUCuGCCAGUaGuGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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