miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11111 3' -58.4 NC_002794.1 + 153053 0.68 0.787342
Target:  5'- cUCGGGcGGacgguccCCGAgcGACGGUCGgaagcUCGCCAg -3'
miRNA:   3'- -AGCCCaCC-------GGCU--CUGCCAGU-----AGUGGU- -5'
11111 3' -58.4 NC_002794.1 + 66015 0.68 0.761279
Target:  5'- cCGaGGcGGCC---GCGGUCGUCGCCGu -3'
miRNA:   3'- aGC-CCaCCGGcucUGCCAGUAGUGGU- -5'
11111 3' -58.4 NC_002794.1 + 189660 0.68 0.761279
Target:  5'- cCGGcUGGCCGAG-CGGUCGcC-CCGg -3'
miRNA:   3'- aGCCcACCGGCUCuGCCAGUaGuGGU- -5'
11111 3' -58.4 NC_002794.1 + 592 0.68 0.760364
Target:  5'- cUCGGuccguucGUGGCCGGGuGCGGUCAggcgGCCc -3'
miRNA:   3'- -AGCC-------CACCGGCUC-UGCCAGUag--UGGu -5'
11111 3' -58.4 NC_002794.1 + 110648 0.69 0.755769
Target:  5'- gUCGGGUuucuccggcGGCUGcAGACagugcagcacgcuguGGUCGUCGCCc -3'
miRNA:   3'- -AGCCCA---------CCGGC-UCUG---------------CCAGUAGUGGu -5'
11111 3' -58.4 NC_002794.1 + 2285 0.69 0.742774
Target:  5'- aCGGGa-GCCGGGGCGuGUCAUaucCACCu -3'
miRNA:   3'- aGCCCacCGGCUCUGC-CAGUA---GUGGu -5'
11111 3' -58.4 NC_002794.1 + 191885 0.69 0.733383
Target:  5'- -gGGGcGGCgGAGGCGGgaUCggCACCGg -3'
miRNA:   3'- agCCCaCCGgCUCUGCC--AGuaGUGGU- -5'
11111 3' -58.4 NC_002794.1 + 138757 0.69 0.730549
Target:  5'- cCGGG-GGCCGAGucgcgGCGGUCgguggaggggagggGUCACgCAc -3'
miRNA:   3'- aGCCCaCCGGCUC-----UGCCAG--------------UAGUG-GU- -5'
11111 3' -58.4 NC_002794.1 + 118252 0.69 0.714365
Target:  5'- gCGGGcuggaggucGGCCGGGGCGG-CggCGCCGg -3'
miRNA:   3'- aGCCCa--------CCGGCUCUGCCaGuaGUGGU- -5'
11111 3' -58.4 NC_002794.1 + 185187 0.7 0.695088
Target:  5'- gUCGGcGcGGUCGGcGCGGUCAUCGCg- -3'
miRNA:   3'- -AGCC-CaCCGGCUcUGCCAGUAGUGgu -5'
11111 3' -58.4 NC_002794.1 + 107000 0.7 0.685372
Target:  5'- gCGGcGcUGGCCGAcgcGACGGUgcUCACCGc -3'
miRNA:   3'- aGCC-C-ACCGGCU---CUGCCAguAGUGGU- -5'
11111 3' -58.4 NC_002794.1 + 123265 0.7 0.665826
Target:  5'- cCGGcUGGuCCGGGccGCGGUCGUCGCgGg -3'
miRNA:   3'- aGCCcACC-GGCUC--UGCCAGUAGUGgU- -5'
11111 3' -58.4 NC_002794.1 + 116071 0.7 0.646179
Target:  5'- -gGGGUcGCgGAGcgcucggcgcgGCGGUCGUCGCCGg -3'
miRNA:   3'- agCCCAcCGgCUC-----------UGCCAGUAGUGGU- -5'
11111 3' -58.4 NC_002794.1 + 142653 0.71 0.626491
Target:  5'- gUCGGGUuuCC-AGACGGUCAUgGCCGc -3'
miRNA:   3'- -AGCCCAccGGcUCUGCCAGUAgUGGU- -5'
11111 3' -58.4 NC_002794.1 + 142143 0.71 0.626491
Target:  5'- cCGGGUcacGGCgGAGGCGG-CGguagCACCGg -3'
miRNA:   3'- aGCCCA---CCGgCUCUGCCaGUa---GUGGU- -5'
11111 3' -58.4 NC_002794.1 + 140135 0.71 0.606818
Target:  5'- gCGGGUGGggaacgaCGAGGCGGUCG-CGCa- -3'
miRNA:   3'- aGCCCACCg------GCUCUGCCAGUaGUGgu -5'
11111 3' -58.4 NC_002794.1 + 123410 0.71 0.593086
Target:  5'- gUCGGcGUGGaguacgacagcgaCGAGGCGGUgacCGUCGCCGa -3'
miRNA:   3'- -AGCC-CACCg------------GCUCUGCCA---GUAGUGGU- -5'
11111 3' -58.4 NC_002794.1 + 37880 0.71 0.586238
Target:  5'- cUCGGGcGGCgGGGGCGGUgGcggcggcagcggcUCGCCGg -3'
miRNA:   3'- -AGCCCaCCGgCUCUGCCAgU-------------AGUGGU- -5'
11111 3' -58.4 NC_002794.1 + 128544 0.72 0.529313
Target:  5'- gUCGGGUGcGCCGuccuGcUGGUCAUCGCg- -3'
miRNA:   3'- -AGCCCAC-CGGCu---CuGCCAGUAGUGgu -5'
11111 3' -58.4 NC_002794.1 + 115141 0.72 0.529313
Target:  5'- gUCGGGUggaGGUCGGucACGGUCcgCACCAg -3'
miRNA:   3'- -AGCCCA---CCGGCUc-UGCCAGuaGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.