Results 1 - 20 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 191885 | 0.69 | 0.733383 |
Target: 5'- -gGGGcGGCgGAGGCGGgaUCggCACCGg -3' miRNA: 3'- agCCCaCCGgCUCUGCC--AGuaGUGGU- -5' |
|||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 189660 | 0.68 | 0.761279 |
Target: 5'- cCGGcUGGCCGAG-CGGUCGcC-CCGg -3' miRNA: 3'- aGCCcACCGGCUCuGCCAGUaGuGGU- -5' |
|||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 185283 | 0.66 | 0.861237 |
Target: 5'- gUGGGccGCCG-GACaGGUCAgCACCAc -3' miRNA: 3'- aGCCCacCGGCuCUG-CCAGUaGUGGU- -5' |
|||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 185187 | 0.7 | 0.695088 |
Target: 5'- gUCGGcGcGGUCGGcGCGGUCAUCGCg- -3' miRNA: 3'- -AGCC-CaCCGGCUcUGCCAGUAGUGgu -5' |
|||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 154341 | 0.66 | 0.881683 |
Target: 5'- cCGGGUgccgcGGCCGAGcucccgcGCGGUCcagGCCGc -3' miRNA: 3'- aGCCCA-----CCGGCUC-------UGCCAGuagUGGU- -5' |
|||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 153053 | 0.68 | 0.787342 |
Target: 5'- cUCGGGcGGacgguccCCGAgcGACGGUCGgaagcUCGCCAg -3' miRNA: 3'- -AGCCCaCC-------GGCU--CUGCCAGU-----AGUGGU- -5' |
|||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 149496 | 0.66 | 0.861237 |
Target: 5'- cUCGGGgauggGGauGGuGACGGggUCGUCGCCGg -3' miRNA: 3'- -AGCCCa----CCggCU-CUGCC--AGUAGUGGU- -5' |
|||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 144881 | 0.68 | 0.788223 |
Target: 5'- cUCGGGUgcgGGgCGAGACGcUCG-CGCCGc -3' miRNA: 3'- -AGCCCA---CCgGCUCUGCcAGUaGUGGU- -5' |
|||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 142653 | 0.71 | 0.626491 |
Target: 5'- gUCGGGUuuCC-AGACGGUCAUgGCCGc -3' miRNA: 3'- -AGCCCAccGGcUCUGCCAGUAgUGGU- -5' |
|||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 142143 | 0.71 | 0.626491 |
Target: 5'- cCGGGUcacGGCgGAGGCGG-CGguagCACCGg -3' miRNA: 3'- aGCCCA---CCGgCUCUGCCaGUa---GUGGU- -5' |
|||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 140418 | 0.68 | 0.796954 |
Target: 5'- cUCGGGUGGCCGcGACGuaca--ACCGg -3' miRNA: 3'- -AGCCCACCGGCuCUGCcaguagUGGU- -5' |
|||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 140135 | 0.71 | 0.606818 |
Target: 5'- gCGGGUGGggaacgaCGAGGCGGUCG-CGCa- -3' miRNA: 3'- aGCCCACCg------GCUCUGCCAGUaGUGgu -5' |
|||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 138757 | 0.69 | 0.730549 |
Target: 5'- cCGGG-GGCCGAGucgcgGCGGUCgguggaggggagggGUCACgCAc -3' miRNA: 3'- aGCCCaCCGGCUC-----UGCCAG--------------UAGUG-GU- -5' |
|||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 134196 | 0.67 | 0.830428 |
Target: 5'- aUCGGcUGGUgGGGGCcGUCGgUCGCCAa -3' miRNA: 3'- -AGCCcACCGgCUCUGcCAGU-AGUGGU- -5' |
|||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 131327 | 0.75 | 0.404332 |
Target: 5'- cUGGGUGGCCGGcucgcccgucguGACGGUUucgcccgugAUCACCGc -3' miRNA: 3'- aGCCCACCGGCU------------CUGCCAG---------UAGUGGU- -5' |
|||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 128544 | 0.72 | 0.529313 |
Target: 5'- gUCGGGUGcGCCGuccuGcUGGUCAUCGCg- -3' miRNA: 3'- -AGCCCAC-CGGCu---CuGCCAGUAGUGgu -5' |
|||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 123410 | 0.71 | 0.593086 |
Target: 5'- gUCGGcGUGGaguacgacagcgaCGAGGCGGUgacCGUCGCCGa -3' miRNA: 3'- -AGCC-CACCg------------GCUCUGCCA---GUAGUGGU- -5' |
|||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 123265 | 0.7 | 0.665826 |
Target: 5'- cCGGcUGGuCCGGGccGCGGUCGUCGCgGg -3' miRNA: 3'- aGCCcACC-GGCUC--UGCCAGUAGUGgU- -5' |
|||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 118252 | 0.69 | 0.714365 |
Target: 5'- gCGGGcuggaggucGGCCGGGGCGG-CggCGCCGg -3' miRNA: 3'- aGCCCa--------CCGGCUCUGCCaGuaGUGGU- -5' |
|||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 116071 | 0.7 | 0.646179 |
Target: 5'- -gGGGUcGCgGAGcgcucggcgcgGCGGUCGUCGCCGg -3' miRNA: 3'- agCCCAcCGgCUC-----------UGCCAGUAGUGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home