Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11111 | 3' | -58.4 | NC_002794.1 | + | 131327 | 0.75 | 0.404332 |
Target: 5'- cUGGGUGGCCGGcucgcccgucguGACGGUUucgcccgugAUCACCGc -3' miRNA: 3'- aGCCCACCGGCU------------CUGCCAG---------UAGUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 32597 | 0.66 | 0.861237 |
Target: 5'- cCGGGgccggGGCCGGGGcCGGggaUCGggccCGCCGa -3' miRNA: 3'- aGCCCa----CCGGCUCU-GCC---AGUa---GUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 110478 | 0.67 | 0.830428 |
Target: 5'- cUCGGGgGGUagaGAGGCGGUgGcggCGCCu -3' miRNA: 3'- -AGCCCaCCGg--CUCUGCCAgUa--GUGGu -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 134196 | 0.67 | 0.830428 |
Target: 5'- aUCGGcUGGUgGGGGCcGUCGgUCGCCAa -3' miRNA: 3'- -AGCCcACCGgCUCUGcCAGU-AGUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 49422 | 0.67 | 0.838397 |
Target: 5'- gCGGcGgcGGCCGucacggcguccGGcGCGGUCGUCGCCGu -3' miRNA: 3'- aGCC-Ca-CCGGC-----------UC-UGCCAGUAGUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 88745 | 0.67 | 0.822293 |
Target: 5'- cUCGGGgucGCCGAGGaauguggugccUGG-CGUCGCCGg -3' miRNA: 3'- -AGCCCac-CGGCUCU-----------GCCaGUAGUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 91048 | 0.67 | 0.813997 |
Target: 5'- -gGGGUGGaCGGGGCGcgcGUCGUCAUg- -3' miRNA: 3'- agCCCACCgGCUCUGC---CAGUAGUGgu -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 140418 | 0.68 | 0.796954 |
Target: 5'- cUCGGGUGGCCGcGACGuaca--ACCGg -3' miRNA: 3'- -AGCCCACCGGCuCUGCcaguagUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 144881 | 0.68 | 0.788223 |
Target: 5'- cUCGGGUgcgGGgCGAGACGcUCG-CGCCGc -3' miRNA: 3'- -AGCCCA---CCgGCUCUGCcAGUaGUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 62053 | 0.66 | 0.861237 |
Target: 5'- gUC-GGUGGCCGAcgccGGCGG-CGaCGCCGg -3' miRNA: 3'- -AGcCCACCGGCU----CUGCCaGUaGUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 149496 | 0.66 | 0.861237 |
Target: 5'- cUCGGGgauggGGauGGuGACGGggUCGUCGCCGg -3' miRNA: 3'- -AGCCCa----CCggCU-CUGCC--AGUAGUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 92480 | 0.66 | 0.866325 |
Target: 5'- cUCGGGccucaaccggugcgUGGaCGAGGCGGcCAUgGCCc -3' miRNA: 3'- -AGCCC--------------ACCgGCUCUGCCaGUAgUGGu -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 63326 | 0.66 | 0.888993 |
Target: 5'- gCGGGgGGcCCGAGcgcggacCGGUCGcUCGCCc -3' miRNA: 3'- aGCCCaCC-GGCUCu------GCCAGU-AGUGGu -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 90976 | 0.66 | 0.887024 |
Target: 5'- uUCGGcGUggccucguaccgGGCCGAGGCGGagCGggccgacaccgacuUCACCGa -3' miRNA: 3'- -AGCC-CA------------CCGGCUCUGCCa-GU--------------AGUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 41180 | 0.66 | 0.875517 |
Target: 5'- cUCGcGGaGGCCGAG-CGucGUCGUCACg- -3' miRNA: 3'- -AGC-CCaCCGGCUCuGC--CAGUAGUGgu -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 43411 | 0.66 | 0.875517 |
Target: 5'- cCGGGcaGGuCCGGGACGG-CAcgACCAg -3' miRNA: 3'- aGCCCa-CC-GGCUCUGCCaGUagUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 44742 | 0.66 | 0.875517 |
Target: 5'- cCGGaG-GGCUaAGACGGcgacUCGUCGCCGu -3' miRNA: 3'- aGCC-CaCCGGcUCUGCC----AGUAGUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 154341 | 0.66 | 0.881683 |
Target: 5'- cCGGGUgccgcGGCCGAGcucccgcGCGGUCcagGCCGc -3' miRNA: 3'- aGCCCA-----CCGGCUC-------UGCCAGuagUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 101022 | 0.66 | 0.868475 |
Target: 5'- gUCGGGggacgcgGGCCGGGcGCGgGUCGgcCGCUAc -3' miRNA: 3'- -AGCCCa------CCGGCUC-UGC-CAGUa-GUGGU- -5' |
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11111 | 3' | -58.4 | NC_002794.1 | + | 185283 | 0.66 | 0.861237 |
Target: 5'- gUGGGccGCCG-GACaGGUCAgCACCAc -3' miRNA: 3'- aGCCCacCGGCuCUG-CCAGUaGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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