miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11111 5' -66.5 NC_002794.1 + 29209 0.66 0.551732
Target:  5'- gUCCGGC--GGUCgGCGgCCGucGGCCg- -3'
miRNA:   3'- -AGGCCGuaCCAGgCGCgGGC--CCGGgc -5'
11111 5' -66.5 NC_002794.1 + 36013 0.66 0.551732
Target:  5'- cUCgGGCGgcGGaaUCCGCcguccgGCCCGGccGCCCGa -3'
miRNA:   3'- -AGgCCGUa-CC--AGGCG------CGGGCC--CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 9478 0.66 0.551732
Target:  5'- aCUGGUcUGGucgacacuuagUCCGUGCCCGGuCUCGa -3'
miRNA:   3'- aGGCCGuACC-----------AGGCGCGGGCCcGGGC- -5'
11111 5' -66.5 NC_002794.1 + 181541 0.66 0.551732
Target:  5'- gCCGGCG-GGcCgGCGCucucggucgCCGGGCCa- -3'
miRNA:   3'- aGGCCGUaCCaGgCGCG---------GGCCCGGgc -5'
11111 5' -66.5 NC_002794.1 + 183460 0.66 0.551732
Target:  5'- gCCGGCGcccgcccgCCGCgaGUCCGcGGCCCGa -3'
miRNA:   3'- aGGCCGUacca----GGCG--CGGGC-CCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 107332 0.66 0.551732
Target:  5'- gUUCGGCuucGGUCCGUggGUCCGGucGCCgCGa -3'
miRNA:   3'- -AGGCCGua-CCAGGCG--CGGGCC--CGG-GC- -5'
11111 5' -66.5 NC_002794.1 + 14493 0.66 0.551732
Target:  5'- uUCgCGGCGgcGGcCCGCGCUCGcGGCgCu -3'
miRNA:   3'- -AG-GCCGUa-CCaGGCGCGGGC-CCGgGc -5'
11111 5' -66.5 NC_002794.1 + 58067 0.66 0.551732
Target:  5'- cCCGGCGgcggcGGgacggGCgGCCCGGcGCCCGc -3'
miRNA:   3'- aGGCCGUa----CCagg--CG-CGGGCC-CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 16370 0.66 0.542623
Target:  5'- aCCcGCGUGcaCgGCGgCCGGGUCCGa -3'
miRNA:   3'- aGGcCGUACcaGgCGCgGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 126372 0.66 0.542623
Target:  5'- gCCGcuGCGUGG---GCGCCgGGGCCUGc -3'
miRNA:   3'- aGGC--CGUACCaggCGCGGgCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 96764 0.66 0.542623
Target:  5'- gCCGGC--GGUCgaGuCGCCCGgGGUCCu -3'
miRNA:   3'- aGGCCGuaCCAGg-C-GCGGGC-CCGGGc -5'
11111 5' -66.5 NC_002794.1 + 57420 0.66 0.542623
Target:  5'- gCCGGCGugcUGGUCgGCa--CGGcGCCCGu -3'
miRNA:   3'- aGGCCGU---ACCAGgCGcggGCC-CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 143272 0.66 0.542623
Target:  5'- cCCGGCccGGcgCCGgcCGCUCGGGgUCGg -3'
miRNA:   3'- aGGCCGuaCCa-GGC--GCGGGCCCgGGC- -5'
11111 5' -66.5 NC_002794.1 + 65081 0.66 0.542623
Target:  5'- cCCGGCGgcggcucgaUGGUCCGaagaGaCCuCGuGGUCCGa -3'
miRNA:   3'- aGGCCGU---------ACCAGGCg---C-GG-GC-CCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 66509 0.66 0.542623
Target:  5'- aUCGGCGagcgauaGG-CCGUcCCCGGGUCCGc -3'
miRNA:   3'- aGGCCGUa------CCaGGCGcGGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 186882 0.66 0.539901
Target:  5'- cUCGGCucgcGGUCCgGCGUCCGcaggaccagguuccGGCCCc -3'
miRNA:   3'- aGGCCGua--CCAGG-CGCGGGC--------------CCGGGc -5'
11111 5' -66.5 NC_002794.1 + 101493 0.66 0.539901
Target:  5'- gCCGGCGgccGGUCCGagcggugcggcacaCGCCggCGGgguGCCCGg -3'
miRNA:   3'- aGGCCGUa--CCAGGC--------------GCGG--GCC---CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 100406 0.66 0.533565
Target:  5'- -gUGGCGUGG-CCGCuGUaCCGGuGCCUGu -3'
miRNA:   3'- agGCCGUACCaGGCG-CG-GGCC-CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 49876 0.66 0.533565
Target:  5'- cCCGGaCGUGGa--GCGCCCGcaGCCCc -3'
miRNA:   3'- aGGCC-GUACCaggCGCGGGCc-CGGGc -5'
11111 5' -66.5 NC_002794.1 + 126422 0.66 0.533565
Target:  5'- aUCUGGCugcUGGUCgaggugugggCGCcucgGCCCuGGGUCCGg -3'
miRNA:   3'- -AGGCCGu--ACCAG----------GCG----CGGG-CCCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.