miRNA display CGI


Results 41 - 60 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11111 5' -66.5 NC_002794.1 + 99785 0.67 0.47018
Target:  5'- gCCGGCGUcgacuacgagCgCGCGCCgCGGGCgCCGg -3'
miRNA:   3'- aGGCCGUAcca-------G-GCGCGG-GCCCG-GGC- -5'
11111 5' -66.5 NC_002794.1 + 23009 0.67 0.471891
Target:  5'- gCCGGUcuucgugaGGUCCGUcCCCG-GCCCGa -3'
miRNA:   3'- aGGCCGua------CCAGGCGcGGGCcCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 189565 0.67 0.471891
Target:  5'- gUCCcGCucGGUCgGCcgGCCCGGGCCgGc -3'
miRNA:   3'- -AGGcCGuaCCAGgCG--CGGGCCCGGgC- -5'
11111 5' -66.5 NC_002794.1 + 43663 0.67 0.489166
Target:  5'- -aCGaGCcgGGcUCuCGgGCCCGGGCgCGg -3'
miRNA:   3'- agGC-CGuaCC-AG-GCgCGGGCCCGgGC- -5'
11111 5' -66.5 NC_002794.1 + 117003 0.67 0.489166
Target:  5'- -gCGGCGUcucgcccaGGUaccagCCGCGCcaccCCGGGUCCGa -3'
miRNA:   3'- agGCCGUA--------CCA-----GGCGCG----GGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 80441 0.67 0.480491
Target:  5'- gCCGGCGg---CCGCcgGCCCGucggcGGCCCGc -3'
miRNA:   3'- aGGCCGUaccaGGCG--CGGGC-----CCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 110276 0.67 0.480491
Target:  5'- -aCGGCGgccgCCGUcCUCGGGCCCGa -3'
miRNA:   3'- agGCCGUaccaGGCGcGGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 83876 0.67 0.480491
Target:  5'- gUCGGCGcgacGGccCCGgGCUCGGcGCCCGa -3'
miRNA:   3'- aGGCCGUa---CCa-GGCgCGGGCC-CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 184160 0.67 0.475322
Target:  5'- gCCGGCGacgGcGUCUccacccgacaccgcgGCGCCCGGcgagGCCCGc -3'
miRNA:   3'- aGGCCGUa--C-CAGG---------------CGCGGGCC----CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 189993 0.67 0.471891
Target:  5'- gUCCGuCcgGGUCCaucggccCGUCCGGGUCCa -3'
miRNA:   3'- -AGGCcGuaCCAGGc------GCGGGCCCGGGc -5'
11111 5' -66.5 NC_002794.1 + 121380 0.67 0.471891
Target:  5'- gCCGGCcgccgccgGGaCCGCGgCCGGcGCCgGg -3'
miRNA:   3'- aGGCCGua------CCaGGCGCgGGCC-CGGgC- -5'
11111 5' -66.5 NC_002794.1 + 180591 0.68 0.398318
Target:  5'- -aCGGCAgcagcuGUCCucGCGCCgCGGGCCaCGa -3'
miRNA:   3'- agGCCGUac----CAGG--CGCGG-GCCCGG-GC- -5'
11111 5' -66.5 NC_002794.1 + 20595 0.68 0.414032
Target:  5'- aCUGGUgcGcUCCGUGCCCGGcuucgagauGCCCGg -3'
miRNA:   3'- aGGCCGuaCcAGGCGCGGGCC---------CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 31391 0.68 0.422031
Target:  5'- gUCGGCGgccccgCCGCGCCCGccgcGCCCGc -3'
miRNA:   3'- aGGCCGUacca--GGCGCGGGCc---CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 92059 0.68 0.422031
Target:  5'- gUCCGGCGUG--CCGCGgCCGGuGCUg- -3'
miRNA:   3'- -AGGCCGUACcaGGCGCgGGCC-CGGgc -5'
11111 5' -66.5 NC_002794.1 + 194500 0.68 0.422031
Target:  5'- cUCCGcGCccGGcCCGCgGCCCGcgugccgccGGCCCa -3'
miRNA:   3'- -AGGC-CGuaCCaGGCG-CGGGC---------CCGGGc -5'
11111 5' -66.5 NC_002794.1 + 56903 0.68 0.430122
Target:  5'- gCCGcGCGUGGcCaCGgGCgCCGGGCugCCGg -3'
miRNA:   3'- aGGC-CGUACCaG-GCgCG-GGCCCG--GGC- -5'
11111 5' -66.5 NC_002794.1 + 179989 0.68 0.430122
Target:  5'- --aGGCgGUGG-CCGCGacggCGGGCCCGg -3'
miRNA:   3'- aggCCG-UACCaGGCGCgg--GCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 46244 0.68 0.430122
Target:  5'- gCCGGCGgcucGUCCGCuucCUCGGGCCg- -3'
miRNA:   3'- aGGCCGUac--CAGGCGc--GGGCCCGGgc -5'
11111 5' -66.5 NC_002794.1 + 112574 0.68 0.40143
Target:  5'- cCCGGCcgcucuccagCUGCGCCaGGGCCCGu -3'
miRNA:   3'- aGGCCGuacca-----GGCGCGGgCCCGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.