miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11111 5' -66.5 NC_002794.1 + 90570 0.71 0.275057
Target:  5'- cCCGGCGgcgGGUCCcggGCGCUccagucccguCGGGCCuCGa -3'
miRNA:   3'- aGGCCGUa--CCAGG---CGCGG----------GCCCGG-GC- -5'
11111 5' -66.5 NC_002794.1 + 40554 0.7 0.325719
Target:  5'- -gCGGCAUGagcuucucGUUCGCGCCguccuggccgCGGGCCCu -3'
miRNA:   3'- agGCCGUAC--------CAGGCGCGG----------GCCCGGGc -5'
11111 5' -66.5 NC_002794.1 + 14729 0.7 0.319024
Target:  5'- cUUCGGCucggGGUCCgGCGCgucaUCGGaGCCCGa -3'
miRNA:   3'- -AGGCCGua--CCAGG-CGCG----GGCC-CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 183643 0.7 0.332518
Target:  5'- cUCGaGCAgGGccgccuucUCCGCG-CCGGGCCCGa -3'
miRNA:   3'- aGGC-CGUaCC--------AGGCGCgGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 86898 0.7 0.332518
Target:  5'- cCCGGCggGG-CCGcCGaCCCGGugacGCCCGu -3'
miRNA:   3'- aGGCCGuaCCaGGC-GC-GGGCC----CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 20221 0.7 0.332518
Target:  5'- aCCGcCAUGGcucUCCGCGCCUGGauGCUCGc -3'
miRNA:   3'- aGGCcGUACC---AGGCGCGGGCC--CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 17419 0.7 0.325719
Target:  5'- -gCGGCcaucgcGGUCUccgcgccgccgGCGCUCGGGCCCGc -3'
miRNA:   3'- agGCCGua----CCAGG-----------CGCGGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 115833 0.7 0.319024
Target:  5'- aUCGGCggGGcCCGgcggGCUCGGGCCUGg -3'
miRNA:   3'- aGGCCGuaCCaGGCg---CGGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 141646 0.7 0.332518
Target:  5'- gCCGGCGUGG-CCGCGgCCgccggCGGGUCg- -3'
miRNA:   3'- aGGCCGUACCaGGCGC-GG-----GCCCGGgc -5'
11111 5' -66.5 NC_002794.1 + 62762 0.7 0.298928
Target:  5'- cUCCGGCuccGGcuguuucgCCGCGCgccgccuCCGGGCCCc -3'
miRNA:   3'- -AGGCCGua-CCa-------GGCGCG-------GGCCCGGGc -5'
11111 5' -66.5 NC_002794.1 + 117710 0.7 0.312432
Target:  5'- -aCGGCGUGGcagcUCCGCGUCUGcuccacguaGGCCUGg -3'
miRNA:   3'- agGCCGUACC----AGGCGCGGGC---------CCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 129246 0.7 0.319024
Target:  5'- cUCCGGCGgacucgGGUCgaGCGCCucgucgugagCGGGCCgGu -3'
miRNA:   3'- -AGGCCGUa-----CCAGg-CGCGG----------GCCCGGgC- -5'
11111 5' -66.5 NC_002794.1 + 102761 0.7 0.29328
Target:  5'- cCCGGacuaCGUGG-CCGCGCaCCGGguGCCCa -3'
miRNA:   3'- aGGCC----GUACCaGGCGCG-GGCC--CGGGc -5'
11111 5' -66.5 NC_002794.1 + 66812 0.7 0.29956
Target:  5'- cCCGGCAUcGUCaggGCGCCCGGcGCgacuCCGg -3'
miRNA:   3'- aGGCCGUAcCAGg--CGCGGGCC-CG----GGC- -5'
11111 5' -66.5 NC_002794.1 + 82207 0.69 0.375476
Target:  5'- cCCGGCAcuccuUCUGCGCUCGaGCCCGg -3'
miRNA:   3'- aGGCCGUacc--AGGCGCGGGCcCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 13793 0.69 0.382991
Target:  5'- cUCCGGCc--GUCUuCGCgaCGGGCCCGg -3'
miRNA:   3'- -AGGCCGuacCAGGcGCGg-GCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 112267 0.69 0.382991
Target:  5'- aCCGGCGUcucguccucGGccUCCGUGucgggcggcccCCCGGGUCCGa -3'
miRNA:   3'- aGGCCGUA---------CC--AGGCGC-----------GGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 128433 0.69 0.382991
Target:  5'- aCCGG-GUGGcCCGCGCgcacggcgccuCCGGaGCCCa -3'
miRNA:   3'- aGGCCgUACCaGGCGCG-----------GGCC-CGGGc -5'
11111 5' -66.5 NC_002794.1 + 104432 0.69 0.382991
Target:  5'- gCCGGCccGGacgCCGCcgcgggcgGCCCGaGCCCGg -3'
miRNA:   3'- aGGCCGuaCCa--GGCG--------CGGGCcCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 185054 0.69 0.375476
Target:  5'- -aCaGCGUGGUCUGCaGCcgCCGcGGCCCGu -3'
miRNA:   3'- agGcCGUACCAGGCG-CG--GGC-CCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.