miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11111 5' -66.5 NC_002794.1 + 191371 0.69 0.375476
Target:  5'- aCgGGCcgGacccUCCGCGCCCGcGGCCg- -3'
miRNA:   3'- aGgCCGuaCc---AGGCGCGGGC-CCGGgc -5'
11111 5' -66.5 NC_002794.1 + 112267 0.69 0.382991
Target:  5'- aCCGGCGUcucguccucGGccUCCGUGucgggcggcccCCCGGGUCCGa -3'
miRNA:   3'- aGGCCGUA---------CC--AGGCGC-----------GGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 187041 0.69 0.360748
Target:  5'- aCCGGCucgcaGUCCcggaGCCCGcGGCCCGc -3'
miRNA:   3'- aGGCCGuac--CAGGcg--CGGGC-CCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 104432 0.69 0.382991
Target:  5'- gCCGGCccGGacgCCGCcgcgggcgGCCCGaGCCCGg -3'
miRNA:   3'- aGGCCGuaCCa--GGCG--------CGGGCcCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 102152 0.69 0.360748
Target:  5'- cUUCGGCGgcGUgCGCGCCgGGGCCa- -3'
miRNA:   3'- -AGGCCGUacCAgGCGCGGgCCCGGgc -5'
11111 5' -66.5 NC_002794.1 + 189865 0.69 0.373241
Target:  5'- gUCGGCGUcgucgccgccgaccGG-CC-CGCUCGGGCCCGc -3'
miRNA:   3'- aGGCCGUA--------------CCaGGcGCGGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 90975 0.69 0.375476
Target:  5'- cUUCGGCGUGG-CCuCGUaCCGGGCCg- -3'
miRNA:   3'- -AGGCCGUACCaGGcGCG-GGCCCGGgc -5'
11111 5' -66.5 NC_002794.1 + 82207 0.69 0.375476
Target:  5'- cCCGGCAcuccuUCUGCGCUCGaGCCCGg -3'
miRNA:   3'- aGGCCGUacc--AGGCGCGGGCcCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 72544 0.69 0.375476
Target:  5'- gCCGcGCGUGGUCgcgcaaCGCGgCCGGgaagaGCCCGc -3'
miRNA:   3'- aGGC-CGUACCAG------GCGCgGGCC-----CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 36351 0.69 0.339421
Target:  5'- cCCGGCGUgcgcggccaccgGGUgCGCGCCCGcGGCg-- -3'
miRNA:   3'- aGGCCGUA------------CCAgGCGCGGGC-CCGggc -5'
11111 5' -66.5 NC_002794.1 + 13793 0.69 0.382991
Target:  5'- cUCCGGCc--GUCUuCGCgaCGGGCCCGg -3'
miRNA:   3'- -AGGCCGuacCAGGcGCGg-GCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 128433 0.69 0.382991
Target:  5'- aCCGG-GUGGcCCGCGCgcacggcgccuCCGGaGCCCa -3'
miRNA:   3'- aGGCCgUACCaGGCGCG-----------GGCC-CGGGc -5'
11111 5' -66.5 NC_002794.1 + 180591 0.68 0.398318
Target:  5'- -aCGGCAgcagcuGUCCucGCGCCgCGGGCCaCGa -3'
miRNA:   3'- agGCCGUac----CAGG--CGCGG-GCCCGG-GC- -5'
11111 5' -66.5 NC_002794.1 + 20595 0.68 0.414032
Target:  5'- aCUGGUgcGcUCCGUGCCCGGcuucgagauGCCCGg -3'
miRNA:   3'- aGGCCGuaCcAGGCGCGGGCC---------CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 31391 0.68 0.422031
Target:  5'- gUCGGCGgccccgCCGCGCCCGccgcGCCCGc -3'
miRNA:   3'- aGGCCGUacca--GGCGCGGGCc---CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 92059 0.68 0.422031
Target:  5'- gUCCGGCGUG--CCGCGgCCGGuGCUg- -3'
miRNA:   3'- -AGGCCGUACcaGGCGCgGGCC-CGGgc -5'
11111 5' -66.5 NC_002794.1 + 194500 0.68 0.422031
Target:  5'- cUCCGcGCccGGcCCGCgGCCCGcgugccgccGGCCCa -3'
miRNA:   3'- -AGGC-CGuaCCaGGCG-CGGGC---------CCGGGc -5'
11111 5' -66.5 NC_002794.1 + 56903 0.68 0.430122
Target:  5'- gCCGcGCGUGGcCaCGgGCgCCGGGCugCCGg -3'
miRNA:   3'- aGGC-CGUACCaG-GCgCG-GGCCCG--GGC- -5'
11111 5' -66.5 NC_002794.1 + 179989 0.68 0.430122
Target:  5'- --aGGCgGUGG-CCGCGacggCGGGCCCGg -3'
miRNA:   3'- aggCCG-UACCaGGCGCgg--GCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 46244 0.68 0.430122
Target:  5'- gCCGGCGgcucGUCCGCuucCUCGGGCCg- -3'
miRNA:   3'- aGGCCGUac--CAGGCGc--GGGCCCGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.