miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11111 5' -66.5 NC_002794.1 + 92059 0.68 0.422031
Target:  5'- gUCCGGCGUG--CCGCGgCCGGuGCUg- -3'
miRNA:   3'- -AGGCCGUACcaGGCGCgGGCC-CGGgc -5'
11111 5' -66.5 NC_002794.1 + 194500 0.68 0.422031
Target:  5'- cUCCGcGCccGGcCCGCgGCCCGcgugccgccGGCCCa -3'
miRNA:   3'- -AGGC-CGuaCCaGGCG-CGGGC---------CCGGGc -5'
11111 5' -66.5 NC_002794.1 + 56903 0.68 0.430122
Target:  5'- gCCGcGCGUGGcCaCGgGCgCCGGGCugCCGg -3'
miRNA:   3'- aGGC-CGUACCaG-GCgCG-GGCCCG--GGC- -5'
11111 5' -66.5 NC_002794.1 + 179989 0.68 0.430122
Target:  5'- --aGGCgGUGG-CCGCGacggCGGGCCCGg -3'
miRNA:   3'- aggCCG-UACCaGGCGCgg--GCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 46244 0.68 0.430122
Target:  5'- gCCGGCGgcucGUCCGCuucCUCGGGCCg- -3'
miRNA:   3'- aGGCCGUac--CAGGCGc--GGGCCCGGgc -5'
11111 5' -66.5 NC_002794.1 + 23009 0.67 0.471891
Target:  5'- gCCGGUcuucgugaGGUCCGUcCCCG-GCCCGa -3'
miRNA:   3'- aGGCCGua------CCAGGCGcGGGCcCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 121380 0.67 0.471891
Target:  5'- gCCGGCcgccgccgGGaCCGCGgCCGGcGCCgGg -3'
miRNA:   3'- aGGCCGua------CCaGGCGCgGGCC-CGGgC- -5'
11111 5' -66.5 NC_002794.1 + 189993 0.67 0.471891
Target:  5'- gUCCGuCcgGGUCCaucggccCGUCCGGGUCCa -3'
miRNA:   3'- -AGGCcGuaCCAGGc------GCGGGCCCGGGc -5'
11111 5' -66.5 NC_002794.1 + 184160 0.67 0.475322
Target:  5'- gCCGGCGacgGcGUCUccacccgacaccgcgGCGCCCGGcgagGCCCGc -3'
miRNA:   3'- aGGCCGUa--C-CAGG---------------CGCGGGCC----CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 83876 0.67 0.480491
Target:  5'- gUCGGCGcgacGGccCCGgGCUCGGcGCCCGa -3'
miRNA:   3'- aGGCCGUa---CCa-GGCgCGGGCC-CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 110276 0.67 0.480491
Target:  5'- -aCGGCGgccgCCGUcCUCGGGCCCGa -3'
miRNA:   3'- agGCCGUaccaGGCGcGGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 99785 0.67 0.47018
Target:  5'- gCCGGCGUcgacuacgagCgCGCGCCgCGGGCgCCGg -3'
miRNA:   3'- aGGCCGUAcca-------G-GCGCGG-GCCCG-GGC- -5'
11111 5' -66.5 NC_002794.1 + 50807 0.67 0.46337
Target:  5'- cCCGGCGUcGGgcgcUCCgGCGCCCccGCCCu -3'
miRNA:   3'- aGGCCGUA-CC----AGG-CGCGGGccCGGGc -5'
11111 5' -66.5 NC_002794.1 + 94414 0.67 0.45493
Target:  5'- -gCGGUGUGGggCGCGCCCGacaaccuggaGGCCUa -3'
miRNA:   3'- agGCCGUACCagGCGCGGGC----------CCGGGc -5'
11111 5' -66.5 NC_002794.1 + 135978 0.67 0.45493
Target:  5'- cCCGGCGccgGGcuccucUUCGCuGUCCGGGUCCa -3'
miRNA:   3'- aGGCCGUa--CC------AGGCG-CGGGCCCGGGc -5'
11111 5' -66.5 NC_002794.1 + 117752 0.67 0.462522
Target:  5'- gUCCGcGCGUGGUgCGCagcaggucguccaGCaCCGGGUUCa -3'
miRNA:   3'- -AGGC-CGUACCAgGCG-------------CG-GGCCCGGGc -5'
11111 5' -66.5 NC_002794.1 + 12706 0.67 0.45493
Target:  5'- gUCGGcCGUGGgcugcgcguUCCGCGgCgacgaGGGCCCGg -3'
miRNA:   3'- aGGCC-GUACC---------AGGCGCgGg----CCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 180924 0.67 0.444913
Target:  5'- gCCGGCGccgucggaggucGGUCuCGCGUCCGcGGCCg- -3'
miRNA:   3'- aGGCCGUa-----------CCAG-GCGCGGGC-CCGGgc -5'
11111 5' -66.5 NC_002794.1 + 45442 0.67 0.446574
Target:  5'- cUCgCGGaCccGGUCgCGCGUCagCGGGCCCa -3'
miRNA:   3'- -AG-GCC-GuaCCAG-GCGCGG--GCCCGGGc -5'
11111 5' -66.5 NC_002794.1 + 188271 0.67 0.441601
Target:  5'- gCgGGCcgGGUagcggaugcagggcgCCGCGCgCCGGaCCCGg -3'
miRNA:   3'- aGgCCGuaCCA---------------GGCGCG-GGCCcGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.