miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11111 5' -66.5 NC_002794.1 + 145317 0.77 0.107365
Target:  5'- aCCGGCGcgcggcgGG-CgGCGCUCGGGCCCGa -3'
miRNA:   3'- aGGCCGUa------CCaGgCGCGGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 185999 0.76 0.120984
Target:  5'- cUCC-GCcgGGcuccgccgcUCCGgGCCCGGGCCCGg -3'
miRNA:   3'- -AGGcCGuaCC---------AGGCgCGGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 72936 0.75 0.146146
Target:  5'- gCCGGC---GUCCGCGCgcccaCCGGGCCCa -3'
miRNA:   3'- aGGCCGuacCAGGCGCG-----GGCCCGGGc -5'
11111 5' -66.5 NC_002794.1 + 94020 0.75 0.156757
Target:  5'- gCCGGCG-GGUUC-CGCCggCGGGCCCGa -3'
miRNA:   3'- aGGCCGUaCCAGGcGCGG--GCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 72449 0.73 0.188524
Target:  5'- aCCGGCGgcgccCCGCGCCCGGcCCCGc -3'
miRNA:   3'- aGGCCGUacca-GGCGCGGGCCcGGGC- -5'
11111 5' -66.5 NC_002794.1 + 151582 0.73 0.201831
Target:  5'- cCCGGCGgcgcgcgCCGcCGCCgCGGGCCCGc -3'
miRNA:   3'- aGGCCGUacca---GGC-GCGG-GCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 13339 0.73 0.205515
Target:  5'- cCCGGUcgGGgguggcggcgccCCuCGCCCGGGCCCu -3'
miRNA:   3'- aGGCCGuaCCa-----------GGcGCGGGCCCGGGc -5'
11111 5' -66.5 NC_002794.1 + 181361 0.73 0.215946
Target:  5'- aUCCGGCccGGUUgaGgGUCaCGGGCCCGg -3'
miRNA:   3'- -AGGCCGuaCCAGg-CgCGG-GCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 87016 0.72 0.236074
Target:  5'- uUCCGGCGagGGUCCGCaggaUCCGGGgaCCGg -3'
miRNA:   3'- -AGGCCGUa-CCAGGCGc---GGGCCCg-GGC- -5'
11111 5' -66.5 NC_002794.1 + 120442 0.72 0.236074
Target:  5'- gCCGGCGUGGaacgCCGCGUcggCCuGGCUCGa -3'
miRNA:   3'- aGGCCGUACCa---GGCGCG---GGcCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 12276 0.72 0.240814
Target:  5'- cUCCGGguU--UCCGCGCCuggguguccgaaaCGGGCCCGc -3'
miRNA:   3'- -AGGCCguAccAGGCGCGG-------------GCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 118281 0.72 0.241346
Target:  5'- gCCGGCGUcGGggaCCGCG-CCGGGCgCGu -3'
miRNA:   3'- aGGCCGUA-CCa--GGCGCgGGCCCGgGC- -5'
11111 5' -66.5 NC_002794.1 + 191523 0.71 0.257751
Target:  5'- gCCgGGCGUcGGcCCGCGCCucccgccgcaguCGGGUCCGg -3'
miRNA:   3'- aGG-CCGUA-CCaGGCGCGG------------GCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 111641 0.71 0.263419
Target:  5'- gCCGGUcgGGcgCCGCGgCCGcGGCCaCGc -3'
miRNA:   3'- aGGCCGuaCCa-GGCGCgGGC-CCGG-GC- -5'
11111 5' -66.5 NC_002794.1 + 35794 0.71 0.263419
Target:  5'- cUCCGGCGUGaccCUGCGCCCccGGaCCCGg -3'
miRNA:   3'- -AGGCCGUACca-GGCGCGGGc-CC-GGGC- -5'
11111 5' -66.5 NC_002794.1 + 90935 0.71 0.268025
Target:  5'- -aCGGCgacGUGGgcgggcugugcgCCGagGCCCGGGCCCGc -3'
miRNA:   3'- agGCCG---UACCa-----------GGCg-CGGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 49037 0.71 0.275057
Target:  5'- gUCCGGCGcGGUCgucaGCGUCCaGGGCgCGc -3'
miRNA:   3'- -AGGCCGUaCCAGg---CGCGGG-CCCGgGC- -5'
11111 5' -66.5 NC_002794.1 + 67536 0.71 0.275057
Target:  5'- aUCCGGCuUGaGcCCucCGCCCGGGCCgCGc -3'
miRNA:   3'- -AGGCCGuAC-CaGGc-GCGGGCCCGG-GC- -5'
11111 5' -66.5 NC_002794.1 + 90570 0.71 0.275057
Target:  5'- cCCGGCGgcgGGUCCcggGCGCUccagucccguCGGGCCuCGa -3'
miRNA:   3'- aGGCCGUa--CCAGG---CGCGG----------GCCCGG-GC- -5'
11111 5' -66.5 NC_002794.1 + 126049 0.71 0.286491
Target:  5'- cCUGGCGgucggacUGGUCgCGCGCCUGG-CCUGg -3'
miRNA:   3'- aGGCCGU-------ACCAG-GCGCGGGCCcGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.