miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11111 5' -66.5 NC_002794.1 + 123264 0.69 0.368062
Target:  5'- gCCGGC-UGGUCCGgGCCgCGGucGUCgCGg -3'
miRNA:   3'- aGGCCGuACCAGGCgCGG-GCC--CGG-GC- -5'
11111 5' -66.5 NC_002794.1 + 189865 0.69 0.373241
Target:  5'- gUCGGCGUcgucgccgccgaccGG-CC-CGCUCGGGCCCGc -3'
miRNA:   3'- aGGCCGUA--------------CCaGGcGCGGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 185054 0.69 0.375476
Target:  5'- -aCaGCGUGGUCUGCaGCcgCCGcGGCCCGu -3'
miRNA:   3'- agGcCGUACCAGGCG-CG--GGC-CCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 82207 0.69 0.375476
Target:  5'- cCCGGCAcuccuUCUGCGCUCGaGCCCGg -3'
miRNA:   3'- aGGCCGUacc--AGGCGCGGGCcCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 191371 0.69 0.375476
Target:  5'- aCgGGCcgGacccUCCGCGCCCGcGGCCg- -3'
miRNA:   3'- aGgCCGuaCc---AGGCGCGGGC-CCGGgc -5'
11111 5' -66.5 NC_002794.1 + 21590 0.69 0.375476
Target:  5'- aCCGGgGcGGUCUGUGCCCGuGaCCCa -3'
miRNA:   3'- aGGCCgUaCCAGGCGCGGGCcC-GGGc -5'
11111 5' -66.5 NC_002794.1 + 90975 0.69 0.375476
Target:  5'- cUUCGGCGUGG-CCuCGUaCCGGGCCg- -3'
miRNA:   3'- -AGGCCGUACCaGGcGCG-GGCCCGGgc -5'
11111 5' -66.5 NC_002794.1 + 72544 0.69 0.375476
Target:  5'- gCCGcGCGUGGUCgcgcaaCGCGgCCGGgaagaGCCCGc -3'
miRNA:   3'- aGGC-CGUACCAG------GCGCgGGCC-----CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 112267 0.69 0.382991
Target:  5'- aCCGGCGUcucguccucGGccUCCGUGucgggcggcccCCCGGGUCCGa -3'
miRNA:   3'- aGGCCGUA---------CC--AGGCGC-----------GGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 104432 0.69 0.382991
Target:  5'- gCCGGCccGGacgCCGCcgcgggcgGCCCGaGCCCGg -3'
miRNA:   3'- aGGCCGuaCCa--GGCG--------CGGGCcCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 128433 0.69 0.382991
Target:  5'- aCCGG-GUGGcCCGCGCgcacggcgccuCCGGaGCCCa -3'
miRNA:   3'- aGGCCgUACCaGGCGCG-----------GGCC-CGGGc -5'
11111 5' -66.5 NC_002794.1 + 13793 0.69 0.382991
Target:  5'- cUCCGGCc--GUCUuCGCgaCGGGCCCGg -3'
miRNA:   3'- -AGGCCGuacCAGGcGCGg-GCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 58872 0.68 0.390605
Target:  5'- aCCGGCAgccGUgCGCGCCgCGcagcucgaGGCCCGc -3'
miRNA:   3'- aGGCCGUac-CAgGCGCGG-GC--------CCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 44273 0.68 0.390605
Target:  5'- gCCGGgGacggagGaGUCCGCGCCCgccGGGCCgGc -3'
miRNA:   3'- aGGCCgUa-----C-CAGGCGCGGG---CCCGGgC- -5'
11111 5' -66.5 NC_002794.1 + 126108 0.68 0.390605
Target:  5'- uUCCGGCccUGGgcgCCGCGCUCGucuGCgCCGg -3'
miRNA:   3'- -AGGCCGu-ACCa--GGCGCGGGCc--CG-GGC- -5'
11111 5' -66.5 NC_002794.1 + 180591 0.68 0.398318
Target:  5'- -aCGGCAgcagcuGUCCucGCGCCgCGGGCCaCGa -3'
miRNA:   3'- agGCCGUac----CAGG--CGCGG-GCCCGG-GC- -5'
11111 5' -66.5 NC_002794.1 + 112574 0.68 0.40143
Target:  5'- cCCGGCcgcucuccagCUGCGCCaGGGCCCGu -3'
miRNA:   3'- aGGCCGuacca-----GGCGCGGgCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 20595 0.68 0.414032
Target:  5'- aCUGGUgcGcUCCGUGCCCGGcuucgagauGCCCGg -3'
miRNA:   3'- aGGCCGuaCcAGGCGCGGGCC---------CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 92059 0.68 0.422031
Target:  5'- gUCCGGCGUG--CCGCGgCCGGuGCUg- -3'
miRNA:   3'- -AGGCCGUACcaGGCGCgGGCC-CGGgc -5'
11111 5' -66.5 NC_002794.1 + 31391 0.68 0.422031
Target:  5'- gUCGGCGgccccgCCGCGCCCGccgcGCCCGc -3'
miRNA:   3'- aGGCCGUacca--GGCGCGGGCc---CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.