miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11111 5' -66.5 NC_002794.1 + 108140 0.66 0.533565
Target:  5'- gCCGGC-UGGaUUCGcCGCCgGGaGCgCCGg -3'
miRNA:   3'- aGGCCGuACC-AGGC-GCGGgCC-CG-GGC- -5'
11111 5' -66.5 NC_002794.1 + 38102 0.66 0.524561
Target:  5'- aCCGGCGUgaagacgcGGgagagCCGCGCCagcugGGGCgUGg -3'
miRNA:   3'- aGGCCGUA--------CCa----GGCGCGGg----CCCGgGC- -5'
11111 5' -66.5 NC_002794.1 + 14576 0.66 0.519186
Target:  5'- gCCGGCcgaccgaagcgggccGUGGcgaGCGCgCCGGGCaCCGc -3'
miRNA:   3'- aGGCCG---------------UACCaggCGCG-GGCCCG-GGC- -5'
11111 5' -66.5 NC_002794.1 + 90461 0.66 0.515615
Target:  5'- uUUCGGCGaGG-CCGCGCgcggCGGGgCCGc -3'
miRNA:   3'- -AGGCCGUaCCaGGCGCGg---GCCCgGGC- -5'
11111 5' -66.5 NC_002794.1 + 91755 0.66 0.515615
Target:  5'- gCCGGCGggcGGcaCCGCGCaggaCGGGCUg- -3'
miRNA:   3'- aGGCCGUa--CCa-GGCGCGg---GCCCGGgc -5'
11111 5' -66.5 NC_002794.1 + 42460 0.66 0.514724
Target:  5'- uUCCauGGCGUcGUCCaugucgcGCGCgCCGGGgCCGa -3'
miRNA:   3'- -AGG--CCGUAcCAGG-------CGCG-GGCCCgGGC- -5'
11111 5' -66.5 NC_002794.1 + 116905 0.66 0.506732
Target:  5'- cUCCGGCGgccGGUCCgGCGUC--GGCuCCGg -3'
miRNA:   3'- -AGGCCGUa--CCAGG-CGCGGgcCCG-GGC- -5'
11111 5' -66.5 NC_002794.1 + 6357 0.66 0.506732
Target:  5'- aCCGGUcacAUGGUgUCGCGguCCCuGGCCCu -3'
miRNA:   3'- aGGCCG---UACCA-GGCGC--GGGcCCGGGc -5'
11111 5' -66.5 NC_002794.1 + 47715 0.66 0.505847
Target:  5'- gUCCGGCAcGGUUCccacgaaGCaGCCCgccGGGUCCa -3'
miRNA:   3'- -AGGCCGUaCCAGG-------CG-CGGG---CCCGGGc -5'
11111 5' -66.5 NC_002794.1 + 34805 0.66 0.501433
Target:  5'- aCCGGCccGGgCCGCGCgacaccacccccucgCCGGcGCCgGa -3'
miRNA:   3'- aGGCCGuaCCaGGCGCG---------------GGCC-CGGgC- -5'
11111 5' -66.5 NC_002794.1 + 140193 0.66 0.497914
Target:  5'- -aCGGCGUcGUCgagggGCGaCCCGGGCCgGa -3'
miRNA:   3'- agGCCGUAcCAGg----CGC-GGGCCCGGgC- -5'
11111 5' -66.5 NC_002794.1 + 116948 0.66 0.497914
Target:  5'- cCCGGCGgcgGcGUCggcggGCGCaggaaCGGGCCCa -3'
miRNA:   3'- aGGCCGUa--C-CAGg----CGCGg----GCCCGGGc -5'
11111 5' -66.5 NC_002794.1 + 43663 0.67 0.489166
Target:  5'- -aCGaGCcgGGcUCuCGgGCCCGGGCgCGg -3'
miRNA:   3'- agGC-CGuaCC-AG-GCgCGGGCCCGgGC- -5'
11111 5' -66.5 NC_002794.1 + 117003 0.67 0.489166
Target:  5'- -gCGGCGUcucgcccaGGUaccagCCGCGCcaccCCGGGUCCGa -3'
miRNA:   3'- agGCCGUA--------CCA-----GGCGCG----GGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 83876 0.67 0.480491
Target:  5'- gUCGGCGcgacGGccCCGgGCUCGGcGCCCGa -3'
miRNA:   3'- aGGCCGUa---CCa-GGCgCGGGCC-CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 110276 0.67 0.480491
Target:  5'- -aCGGCGgccgCCGUcCUCGGGCCCGa -3'
miRNA:   3'- agGCCGUaccaGGCGcGGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 80441 0.67 0.480491
Target:  5'- gCCGGCGg---CCGCcgGCCCGucggcGGCCCGc -3'
miRNA:   3'- aGGCCGUaccaGGCG--CGGGC-----CCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 184160 0.67 0.475322
Target:  5'- gCCGGCGacgGcGUCUccacccgacaccgcgGCGCCCGGcgagGCCCGc -3'
miRNA:   3'- aGGCCGUa--C-CAGG---------------CGCGGGCC----CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 121380 0.67 0.471891
Target:  5'- gCCGGCcgccgccgGGaCCGCGgCCGGcGCCgGg -3'
miRNA:   3'- aGGCCGua------CCaGGCGCgGGCC-CGGgC- -5'
11111 5' -66.5 NC_002794.1 + 189565 0.67 0.471891
Target:  5'- gUCCcGCucGGUCgGCcgGCCCGGGCCgGc -3'
miRNA:   3'- -AGGcCGuaCCAGgCG--CGGGCCCGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.