miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11111 5' -66.5 NC_002794.1 + 6357 0.66 0.506732
Target:  5'- aCCGGUcacAUGGUgUCGCGguCCCuGGCCCu -3'
miRNA:   3'- aGGCCG---UACCA-GGCGC--GGGcCCGGGc -5'
11111 5' -66.5 NC_002794.1 + 8142 0.69 0.359297
Target:  5'- aCCGGCGacGGcaCCGCuucuccuucuccCCCGGGCCCGg -3'
miRNA:   3'- aGGCCGUa-CCa-GGCGc-----------GGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 9478 0.66 0.551732
Target:  5'- aCUGGUcUGGucgacacuuagUCCGUGCCCGGuCUCGa -3'
miRNA:   3'- aGGCCGuACC-----------AGGCGCGGGCCcGGGC- -5'
11111 5' -66.5 NC_002794.1 + 12276 0.72 0.240814
Target:  5'- cUCCGGguU--UCCGCGCCuggguguccgaaaCGGGCCCGc -3'
miRNA:   3'- -AGGCCguAccAGGCGCGG-------------GCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 12706 0.67 0.45493
Target:  5'- gUCGGcCGUGGgcugcgcguUCCGCGgCgacgaGGGCCCGg -3'
miRNA:   3'- aGGCC-GUACC---------AGGCGCgGg----CCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 13339 0.73 0.205515
Target:  5'- cCCGGUcgGGgguggcggcgccCCuCGCCCGGGCCCu -3'
miRNA:   3'- aGGCCGuaCCa-----------GGcGCGGGCCCGGGc -5'
11111 5' -66.5 NC_002794.1 + 13793 0.69 0.382991
Target:  5'- cUCCGGCc--GUCUuCGCgaCGGGCCCGg -3'
miRNA:   3'- -AGGCCGuacCAGGcGCGg-GCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 14493 0.66 0.551732
Target:  5'- uUCgCGGCGgcGGcCCGCGCUCGcGGCgCu -3'
miRNA:   3'- -AG-GCCGUa-CCaGGCGCGGGC-CCGgGc -5'
11111 5' -66.5 NC_002794.1 + 14576 0.66 0.519186
Target:  5'- gCCGGCcgaccgaagcgggccGUGGcgaGCGCgCCGGGCaCCGc -3'
miRNA:   3'- aGGCCG---------------UACCaggCGCG-GGCCCG-GGC- -5'
11111 5' -66.5 NC_002794.1 + 14729 0.7 0.319024
Target:  5'- cUUCGGCucggGGUCCgGCGCgucaUCGGaGCCCGa -3'
miRNA:   3'- -AGGCCGua--CCAGG-CGCG----GGCC-CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 16370 0.66 0.542623
Target:  5'- aCCcGCGUGcaCgGCGgCCGGGUCCGa -3'
miRNA:   3'- aGGcCGUACcaGgCGCgGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 17419 0.7 0.325719
Target:  5'- -gCGGCcaucgcGGUCUccgcgccgccgGCGCUCGGGCCCGc -3'
miRNA:   3'- agGCCGua----CCAGG-----------CGCGGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 20221 0.7 0.332518
Target:  5'- aCCGcCAUGGcucUCCGCGCCUGGauGCUCGc -3'
miRNA:   3'- aGGCcGUACC---AGGCGCGGGCC--CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 20595 0.68 0.414032
Target:  5'- aCUGGUgcGcUCCGUGCCCGGcuucgagauGCCCGg -3'
miRNA:   3'- aGGCCGuaCcAGGCGCGGGCC---------CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 21590 0.69 0.375476
Target:  5'- aCCGGgGcGGUCUGUGCCCGuGaCCCa -3'
miRNA:   3'- aGGCCgUaCCAGGCGCGGGCcC-GGGc -5'
11111 5' -66.5 NC_002794.1 + 23009 0.67 0.471891
Target:  5'- gCCGGUcuucgugaGGUCCGUcCCCG-GCCCGa -3'
miRNA:   3'- aGGCCGua------CCAGGCGcGGGCcCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 29209 0.66 0.551732
Target:  5'- gUCCGGC--GGUCgGCGgCCGucGGCCg- -3'
miRNA:   3'- -AGGCCGuaCCAGgCGCgGGC--CCGGgc -5'
11111 5' -66.5 NC_002794.1 + 31391 0.68 0.422031
Target:  5'- gUCGGCGgccccgCCGCGCCCGccgcGCCCGc -3'
miRNA:   3'- aGGCCGUacca--GGCGCGGGCc---CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 34805 0.66 0.501433
Target:  5'- aCCGGCccGGgCCGCGCgacaccacccccucgCCGGcGCCgGa -3'
miRNA:   3'- aGGCCGuaCCaGGCGCG---------------GGCC-CGGgC- -5'
11111 5' -66.5 NC_002794.1 + 35794 0.71 0.263419
Target:  5'- cUCCGGCGUGaccCUGCGCCCccGGaCCCGg -3'
miRNA:   3'- -AGGCCGUACca-GGCGCGGGc-CC-GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.