miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11111 5' -66.5 NC_002794.1 + 66509 0.66 0.542623
Target:  5'- aUCGGCGagcgauaGG-CCGUcCCCGGGUCCGc -3'
miRNA:   3'- aGGCCGUa------CCaGGCGcGGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 66812 0.7 0.29956
Target:  5'- cCCGGCAUcGUCaggGCGCCCGGcGCgacuCCGg -3'
miRNA:   3'- aGGCCGUAcCAGg--CGCGGGCC-CG----GGC- -5'
11111 5' -66.5 NC_002794.1 + 67536 0.71 0.275057
Target:  5'- aUCCGGCuUGaGcCCucCGCCCGGGCCgCGc -3'
miRNA:   3'- -AGGCCGuAC-CaGGc-GCGGGCCCGG-GC- -5'
11111 5' -66.5 NC_002794.1 + 72449 0.73 0.188524
Target:  5'- aCCGGCGgcgccCCGCGCCCGGcCCCGc -3'
miRNA:   3'- aGGCCGUacca-GGCGCGGGCCcGGGC- -5'
11111 5' -66.5 NC_002794.1 + 72544 0.69 0.375476
Target:  5'- gCCGcGCGUGGUCgcgcaaCGCGgCCGGgaagaGCCCGc -3'
miRNA:   3'- aGGC-CGUACCAG------GCGCgGGCC-----CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 72936 0.75 0.146146
Target:  5'- gCCGGC---GUCCGCGCgcccaCCGGGCCCa -3'
miRNA:   3'- aGGCCGuacCAGGCGCG-----GGCCCGGGc -5'
11111 5' -66.5 NC_002794.1 + 80441 0.67 0.480491
Target:  5'- gCCGGCGg---CCGCcgGCCCGucggcGGCCCGc -3'
miRNA:   3'- aGGCCGUaccaGGCG--CGGGC-----CCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 82207 0.69 0.375476
Target:  5'- cCCGGCAcuccuUCUGCGCUCGaGCCCGg -3'
miRNA:   3'- aGGCCGUacc--AGGCGCGGGCcCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 83876 0.67 0.480491
Target:  5'- gUCGGCGcgacGGccCCGgGCUCGGcGCCCGa -3'
miRNA:   3'- aGGCCGUa---CCa-GGCgCGGGCC-CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 86898 0.7 0.332518
Target:  5'- cCCGGCggGG-CCGcCGaCCCGGugacGCCCGu -3'
miRNA:   3'- aGGCCGuaCCaGGC-GC-GGGCC----CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 87016 0.72 0.236074
Target:  5'- uUCCGGCGagGGUCCGCaggaUCCGGGgaCCGg -3'
miRNA:   3'- -AGGCCGUa-CCAGGCGc---GGGCCCg-GGC- -5'
11111 5' -66.5 NC_002794.1 + 90461 0.66 0.515615
Target:  5'- uUUCGGCGaGG-CCGCGCgcggCGGGgCCGc -3'
miRNA:   3'- -AGGCCGUaCCaGGCGCGg---GCCCgGGC- -5'
11111 5' -66.5 NC_002794.1 + 90570 0.71 0.275057
Target:  5'- cCCGGCGgcgGGUCCcggGCGCUccagucccguCGGGCCuCGa -3'
miRNA:   3'- aGGCCGUa--CCAGG---CGCGG----------GCCCGG-GC- -5'
11111 5' -66.5 NC_002794.1 + 90935 0.71 0.268025
Target:  5'- -aCGGCgacGUGGgcgggcugugcgCCGagGCCCGGGCCCGc -3'
miRNA:   3'- agGCCG---UACCa-----------GGCg-CGGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 90975 0.69 0.375476
Target:  5'- cUUCGGCGUGG-CCuCGUaCCGGGCCg- -3'
miRNA:   3'- -AGGCCGUACCaGGcGCG-GGCCCGGgc -5'
11111 5' -66.5 NC_002794.1 + 91755 0.66 0.515615
Target:  5'- gCCGGCGggcGGcaCCGCGCaggaCGGGCUg- -3'
miRNA:   3'- aGGCCGUa--CCa-GGCGCGg---GCCCGGgc -5'
11111 5' -66.5 NC_002794.1 + 92059 0.68 0.422031
Target:  5'- gUCCGGCGUG--CCGCGgCCGGuGCUg- -3'
miRNA:   3'- -AGGCCGUACcaGGCGCgGGCC-CGGgc -5'
11111 5' -66.5 NC_002794.1 + 94020 0.75 0.156757
Target:  5'- gCCGGCG-GGUUC-CGCCggCGGGCCCGa -3'
miRNA:   3'- aGGCCGUaCCAGGcGCGG--GCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 94414 0.67 0.45493
Target:  5'- -gCGGUGUGGggCGCGCCCGacaaccuggaGGCCUa -3'
miRNA:   3'- agGCCGUACCagGCGCGGGC----------CCGGGc -5'
11111 5' -66.5 NC_002794.1 + 96764 0.66 0.542623
Target:  5'- gCCGGC--GGUCgaGuCGCCCGgGGUCCu -3'
miRNA:   3'- aGGCCGuaCCAGg-C-GCGGGC-CCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.