miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11111 5' -66.5 NC_002794.1 + 99785 0.67 0.47018
Target:  5'- gCCGGCGUcgacuacgagCgCGCGCCgCGGGCgCCGg -3'
miRNA:   3'- aGGCCGUAcca-------G-GCGCGG-GCCCG-GGC- -5'
11111 5' -66.5 NC_002794.1 + 100406 0.66 0.533565
Target:  5'- -gUGGCGUGG-CCGCuGUaCCGGuGCCUGu -3'
miRNA:   3'- agGCCGUACCaGGCG-CG-GGCC-CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 101247 0.68 0.430122
Target:  5'- cUCCGGCGcgcagcgGGgggCCGCcCCCGGcGCCgGu -3'
miRNA:   3'- -AGGCCGUa------CCa--GGCGcGGGCC-CGGgC- -5'
11111 5' -66.5 NC_002794.1 + 101493 0.66 0.539901
Target:  5'- gCCGGCGgccGGUCCGagcggugcggcacaCGCCggCGGgguGCCCGg -3'
miRNA:   3'- aGGCCGUa--CCAGGC--------------GCGG--GCC---CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 102152 0.69 0.360748
Target:  5'- cUUCGGCGgcGUgCGCGCCgGGGCCa- -3'
miRNA:   3'- -AGGCCGUacCAgGCGCGGgCCCGGgc -5'
11111 5' -66.5 NC_002794.1 + 102761 0.7 0.29328
Target:  5'- cCCGGacuaCGUGG-CCGCGCaCCGGguGCCCa -3'
miRNA:   3'- aGGCC----GUACCaGGCGCG-GGCC--CGGGc -5'
11111 5' -66.5 NC_002794.1 + 104432 0.69 0.382991
Target:  5'- gCCGGCccGGacgCCGCcgcgggcgGCCCGaGCCCGg -3'
miRNA:   3'- aGGCCGuaCCa--GGCG--------CGGGCcCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 107332 0.66 0.551732
Target:  5'- gUUCGGCuucGGUCCGUggGUCCGGucGCCgCGa -3'
miRNA:   3'- -AGGCCGua-CCAGGCG--CGGGCC--CGG-GC- -5'
11111 5' -66.5 NC_002794.1 + 108140 0.66 0.533565
Target:  5'- gCCGGC-UGGaUUCGcCGCCgGGaGCgCCGg -3'
miRNA:   3'- aGGCCGuACC-AGGC-GCGGgCC-CG-GGC- -5'
11111 5' -66.5 NC_002794.1 + 110276 0.67 0.480491
Target:  5'- -aCGGCGgccgCCGUcCUCGGGCCCGa -3'
miRNA:   3'- agGCCGUaccaGGCGcGGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 111641 0.71 0.263419
Target:  5'- gCCGGUcgGGcgCCGCGgCCGcGGCCaCGc -3'
miRNA:   3'- aGGCCGuaCCa-GGCGCgGGC-CCGG-GC- -5'
11111 5' -66.5 NC_002794.1 + 112267 0.69 0.382991
Target:  5'- aCCGGCGUcucguccucGGccUCCGUGucgggcggcccCCCGGGUCCGa -3'
miRNA:   3'- aGGCCGUA---------CC--AGGCGC-----------GGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 112574 0.68 0.40143
Target:  5'- cCCGGCcgcucuccagCUGCGCCaGGGCCCGu -3'
miRNA:   3'- aGGCCGuacca-----GGCGCGGgCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 115833 0.7 0.319024
Target:  5'- aUCGGCggGGcCCGgcggGCUCGGGCCUGg -3'
miRNA:   3'- aGGCCGuaCCaGGCg---CGGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 116905 0.66 0.506732
Target:  5'- cUCCGGCGgccGGUCCgGCGUC--GGCuCCGg -3'
miRNA:   3'- -AGGCCGUa--CCAGG-CGCGGgcCCG-GGC- -5'
11111 5' -66.5 NC_002794.1 + 116948 0.66 0.497914
Target:  5'- cCCGGCGgcgGcGUCggcggGCGCaggaaCGGGCCCa -3'
miRNA:   3'- aGGCCGUa--C-CAGg----CGCGg----GCCCGGGc -5'
11111 5' -66.5 NC_002794.1 + 117003 0.67 0.489166
Target:  5'- -gCGGCGUcucgcccaGGUaccagCCGCGCcaccCCGGGUCCGa -3'
miRNA:   3'- agGCCGUA--------CCA-----GGCGCG----GGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 117710 0.7 0.312432
Target:  5'- -aCGGCGUGGcagcUCCGCGUCUGcuccacguaGGCCUGg -3'
miRNA:   3'- agGCCGUACC----AGGCGCGGGC---------CCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 117752 0.67 0.462522
Target:  5'- gUCCGcGCGUGGUgCGCagcaggucguccaGCaCCGGGUUCa -3'
miRNA:   3'- -AGGC-CGUACCAgGCG-------------CG-GGCCCGGGc -5'
11111 5' -66.5 NC_002794.1 + 118281 0.72 0.241346
Target:  5'- gCCGGCGUcGGggaCCGCG-CCGGGCgCGu -3'
miRNA:   3'- aGGCCGUA-CCa--GGCGCgGGCCCGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.