Results 41 - 60 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11111 | 5' | -66.5 | NC_002794.1 | + | 116948 | 0.66 | 0.497914 |
Target: 5'- cCCGGCGgcgGcGUCggcggGCGCaggaaCGGGCCCa -3' miRNA: 3'- aGGCCGUa--C-CAGg----CGCGg----GCCCGGGc -5' |
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11111 | 5' | -66.5 | NC_002794.1 | + | 116905 | 0.66 | 0.506732 |
Target: 5'- cUCCGGCGgccGGUCCgGCGUC--GGCuCCGg -3' miRNA: 3'- -AGGCCGUa--CCAGG-CGCGGgcCCG-GGC- -5' |
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11111 | 5' | -66.5 | NC_002794.1 | + | 115833 | 0.7 | 0.319024 |
Target: 5'- aUCGGCggGGcCCGgcggGCUCGGGCCUGg -3' miRNA: 3'- aGGCCGuaCCaGGCg---CGGGCCCGGGC- -5' |
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11111 | 5' | -66.5 | NC_002794.1 | + | 112574 | 0.68 | 0.40143 |
Target: 5'- cCCGGCcgcucuccagCUGCGCCaGGGCCCGu -3' miRNA: 3'- aGGCCGuacca-----GGCGCGGgCCCGGGC- -5' |
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11111 | 5' | -66.5 | NC_002794.1 | + | 112267 | 0.69 | 0.382991 |
Target: 5'- aCCGGCGUcucguccucGGccUCCGUGucgggcggcccCCCGGGUCCGa -3' miRNA: 3'- aGGCCGUA---------CC--AGGCGC-----------GGGCCCGGGC- -5' |
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11111 | 5' | -66.5 | NC_002794.1 | + | 111641 | 0.71 | 0.263419 |
Target: 5'- gCCGGUcgGGcgCCGCGgCCGcGGCCaCGc -3' miRNA: 3'- aGGCCGuaCCa-GGCGCgGGC-CCGG-GC- -5' |
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11111 | 5' | -66.5 | NC_002794.1 | + | 110276 | 0.67 | 0.480491 |
Target: 5'- -aCGGCGgccgCCGUcCUCGGGCCCGa -3' miRNA: 3'- agGCCGUaccaGGCGcGGGCCCGGGC- -5' |
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11111 | 5' | -66.5 | NC_002794.1 | + | 108140 | 0.66 | 0.533565 |
Target: 5'- gCCGGC-UGGaUUCGcCGCCgGGaGCgCCGg -3' miRNA: 3'- aGGCCGuACC-AGGC-GCGGgCC-CG-GGC- -5' |
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11111 | 5' | -66.5 | NC_002794.1 | + | 107332 | 0.66 | 0.551732 |
Target: 5'- gUUCGGCuucGGUCCGUggGUCCGGucGCCgCGa -3' miRNA: 3'- -AGGCCGua-CCAGGCG--CGGGCC--CGG-GC- -5' |
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11111 | 5' | -66.5 | NC_002794.1 | + | 104432 | 0.69 | 0.382991 |
Target: 5'- gCCGGCccGGacgCCGCcgcgggcgGCCCGaGCCCGg -3' miRNA: 3'- aGGCCGuaCCa--GGCG--------CGGGCcCGGGC- -5' |
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11111 | 5' | -66.5 | NC_002794.1 | + | 102761 | 0.7 | 0.29328 |
Target: 5'- cCCGGacuaCGUGG-CCGCGCaCCGGguGCCCa -3' miRNA: 3'- aGGCC----GUACCaGGCGCG-GGCC--CGGGc -5' |
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11111 | 5' | -66.5 | NC_002794.1 | + | 102152 | 0.69 | 0.360748 |
Target: 5'- cUUCGGCGgcGUgCGCGCCgGGGCCa- -3' miRNA: 3'- -AGGCCGUacCAgGCGCGGgCCCGGgc -5' |
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11111 | 5' | -66.5 | NC_002794.1 | + | 101493 | 0.66 | 0.539901 |
Target: 5'- gCCGGCGgccGGUCCGagcggugcggcacaCGCCggCGGgguGCCCGg -3' miRNA: 3'- aGGCCGUa--CCAGGC--------------GCGG--GCC---CGGGC- -5' |
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11111 | 5' | -66.5 | NC_002794.1 | + | 101247 | 0.68 | 0.430122 |
Target: 5'- cUCCGGCGcgcagcgGGgggCCGCcCCCGGcGCCgGu -3' miRNA: 3'- -AGGCCGUa------CCa--GGCGcGGGCC-CGGgC- -5' |
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11111 | 5' | -66.5 | NC_002794.1 | + | 100406 | 0.66 | 0.533565 |
Target: 5'- -gUGGCGUGG-CCGCuGUaCCGGuGCCUGu -3' miRNA: 3'- agGCCGUACCaGGCG-CG-GGCC-CGGGC- -5' |
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11111 | 5' | -66.5 | NC_002794.1 | + | 99785 | 0.67 | 0.47018 |
Target: 5'- gCCGGCGUcgacuacgagCgCGCGCCgCGGGCgCCGg -3' miRNA: 3'- aGGCCGUAcca-------G-GCGCGG-GCCCG-GGC- -5' |
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11111 | 5' | -66.5 | NC_002794.1 | + | 96764 | 0.66 | 0.542623 |
Target: 5'- gCCGGC--GGUCgaGuCGCCCGgGGUCCu -3' miRNA: 3'- aGGCCGuaCCAGg-C-GCGGGC-CCGGGc -5' |
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11111 | 5' | -66.5 | NC_002794.1 | + | 94414 | 0.67 | 0.45493 |
Target: 5'- -gCGGUGUGGggCGCGCCCGacaaccuggaGGCCUa -3' miRNA: 3'- agGCCGUACCagGCGCGGGC----------CCGGGc -5' |
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11111 | 5' | -66.5 | NC_002794.1 | + | 94020 | 0.75 | 0.156757 |
Target: 5'- gCCGGCG-GGUUC-CGCCggCGGGCCCGa -3' miRNA: 3'- aGGCCGUaCCAGGcGCGG--GCCCGGGC- -5' |
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11111 | 5' | -66.5 | NC_002794.1 | + | 92059 | 0.68 | 0.422031 |
Target: 5'- gUCCGGCGUG--CCGCGgCCGGuGCUg- -3' miRNA: 3'- -AGGCCGUACcaGGCGCgGGCC-CGGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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