miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11111 5' -66.5 NC_002794.1 + 181541 0.66 0.551732
Target:  5'- gCCGGCG-GGcCgGCGCucucggucgCCGGGCCa- -3'
miRNA:   3'- aGGCCGUaCCaGgCGCG---------GGCCCGGgc -5'
11111 5' -66.5 NC_002794.1 + 183460 0.66 0.551732
Target:  5'- gCCGGCGcccgcccgCCGCgaGUCCGcGGCCCGa -3'
miRNA:   3'- aGGCCGUacca----GGCG--CGGGC-CCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 107332 0.66 0.551732
Target:  5'- gUUCGGCuucGGUCCGUggGUCCGGucGCCgCGa -3'
miRNA:   3'- -AGGCCGua-CCAGGCG--CGGGCC--CGG-GC- -5'
11111 5' -66.5 NC_002794.1 + 14493 0.66 0.551732
Target:  5'- uUCgCGGCGgcGGcCCGCGCUCGcGGCgCu -3'
miRNA:   3'- -AG-GCCGUa-CCaGGCGCGGGC-CCGgGc -5'
11111 5' -66.5 NC_002794.1 + 58067 0.66 0.551732
Target:  5'- cCCGGCGgcggcGGgacggGCgGCCCGGcGCCCGc -3'
miRNA:   3'- aGGCCGUa----CCagg--CG-CGGGCC-CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 186882 0.66 0.539901
Target:  5'- cUCGGCucgcGGUCCgGCGUCCGcaggaccagguuccGGCCCc -3'
miRNA:   3'- aGGCCGua--CCAGG-CGCGGGC--------------CCGGGc -5'
11111 5' -66.5 NC_002794.1 + 16370 0.66 0.542623
Target:  5'- aCCcGCGUGcaCgGCGgCCGGGUCCGa -3'
miRNA:   3'- aGGcCGUACcaGgCGCgGGCCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 47715 0.66 0.505847
Target:  5'- gUCCGGCAcGGUUCccacgaaGCaGCCCgccGGGUCCa -3'
miRNA:   3'- -AGGCCGUaCCAGG-------CG-CGGG---CCCGGGc -5'
11111 5' -66.5 NC_002794.1 + 6357 0.66 0.506732
Target:  5'- aCCGGUcacAUGGUgUCGCGguCCCuGGCCCu -3'
miRNA:   3'- aGGCCG---UACCA-GGCGC--GGGcCCGGGc -5'
11111 5' -66.5 NC_002794.1 + 42460 0.66 0.514724
Target:  5'- uUCCauGGCGUcGUCCaugucgcGCGCgCCGGGgCCGa -3'
miRNA:   3'- -AGG--CCGUAcCAGG-------CGCG-GGCCCgGGC- -5'
11111 5' -66.5 NC_002794.1 + 116905 0.66 0.506732
Target:  5'- cUCCGGCGgccGGUCCgGCGUC--GGCuCCGg -3'
miRNA:   3'- -AGGCCGUa--CCAGG-CGCGGgcCCG-GGC- -5'
11111 5' -66.5 NC_002794.1 + 91755 0.66 0.515615
Target:  5'- gCCGGCGggcGGcaCCGCGCaggaCGGGCUg- -3'
miRNA:   3'- aGGCCGUa--CCa-GGCGCGg---GCCCGGgc -5'
11111 5' -66.5 NC_002794.1 + 90461 0.66 0.515615
Target:  5'- uUUCGGCGaGG-CCGCGCgcggCGGGgCCGc -3'
miRNA:   3'- -AGGCCGUaCCaGGCGCGg---GCCCgGGC- -5'
11111 5' -66.5 NC_002794.1 + 14576 0.66 0.519186
Target:  5'- gCCGGCcgaccgaagcgggccGUGGcgaGCGCgCCGGGCaCCGc -3'
miRNA:   3'- aGGCCG---------------UACCaggCGCG-GGCCCG-GGC- -5'
11111 5' -66.5 NC_002794.1 + 108140 0.66 0.533565
Target:  5'- gCCGGC-UGGaUUCGcCGCCgGGaGCgCCGg -3'
miRNA:   3'- aGGCCGuACC-AGGC-GCGGgCC-CG-GGC- -5'
11111 5' -66.5 NC_002794.1 + 38102 0.66 0.524561
Target:  5'- aCCGGCGUgaagacgcGGgagagCCGCGCCagcugGGGCgUGg -3'
miRNA:   3'- aGGCCGUA--------CCa----GGCGCGGg----CCCGgGC- -5'
11111 5' -66.5 NC_002794.1 + 126422 0.66 0.533565
Target:  5'- aUCUGGCugcUGGUCgaggugugggCGCcucgGCCCuGGGUCCGg -3'
miRNA:   3'- -AGGCCGu--ACCAG----------GCG----CGGG-CCCGGGC- -5'
11111 5' -66.5 NC_002794.1 + 49876 0.66 0.533565
Target:  5'- cCCGGaCGUGGa--GCGCCCGcaGCCCc -3'
miRNA:   3'- aGGCC-GUACCaggCGCGGGCc-CGGGc -5'
11111 5' -66.5 NC_002794.1 + 100406 0.66 0.533565
Target:  5'- -gUGGCGUGG-CCGCuGUaCCGGuGCCUGu -3'
miRNA:   3'- agGCCGUACCaGGCG-CG-GGCC-CGGGC- -5'
11111 5' -66.5 NC_002794.1 + 101493 0.66 0.539901
Target:  5'- gCCGGCGgccGGUCCGagcggugcggcacaCGCCggCGGgguGCCCGg -3'
miRNA:   3'- aGGCCGUa--CCAGGC--------------GCGG--GCC---CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.