miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11113 3' -55.4 NC_002794.1 + 63453 0.66 0.965251
Target:  5'- gCCGcGGCGGCGaCGAugACGAcGAGGCg-- -3'
miRNA:   3'- -GGUcCUGCCGC-GCU--UGCU-CUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 182293 0.66 0.965251
Target:  5'- aCGGGGCGG-GUGGACGGGcagacGGGCg-- -3'
miRNA:   3'- gGUCCUGCCgCGCUUGCUC-----UUCGagu -5'
11113 3' -55.4 NC_002794.1 + 111322 0.66 0.965251
Target:  5'- gCCGGGccaGCGGCGCGGGcCGcAGAucuGC-CGg -3'
miRNA:   3'- -GGUCC---UGCCGCGCUU-GC-UCUu--CGaGU- -5'
11113 3' -55.4 NC_002794.1 + 184513 0.66 0.965251
Target:  5'- gCGGGccccgcgcGCGGCGCGGGCGAcGccGCcCAc -3'
miRNA:   3'- gGUCC--------UGCCGCGCUUGCU-CuuCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 34277 0.66 0.965251
Target:  5'- gCAGG-CGGCcaGCGccAGCGAccgGGAGCUCu -3'
miRNA:   3'- gGUCCuGCCG--CGC--UUGCU---CUUCGAGu -5'
11113 3' -55.4 NC_002794.1 + 47446 0.66 0.961966
Target:  5'- uUCAGGACGGgGC--ACGAGAcGacgaUCAa -3'
miRNA:   3'- -GGUCCUGCCgCGcuUGCUCUuCg---AGU- -5'
11113 3' -55.4 NC_002794.1 + 107626 0.66 0.961966
Target:  5'- aCGGuGGCGGUGaCGAA-GAGGAGCg-- -3'
miRNA:   3'- gGUC-CUGCCGC-GCUUgCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 128944 0.66 0.961966
Target:  5'- uCC-GGugGagccuGCGcCGGACGAGucGCUCGa -3'
miRNA:   3'- -GGuCCugC-----CGC-GCUUGCUCuuCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 130018 0.66 0.961966
Target:  5'- gCGGGuCGGCcuCGcGCGAGGAGCg-- -3'
miRNA:   3'- gGUCCuGCCGc-GCuUGCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 56377 0.66 0.961966
Target:  5'- cUCGGGAuccacCGGCaCGGauuGCGAGAGGCgcgCAu -3'
miRNA:   3'- -GGUCCU-----GCCGcGCU---UGCUCUUCGa--GU- -5'
11113 3' -55.4 NC_002794.1 + 139474 0.66 0.958111
Target:  5'- gCCAGGACggugguguagaugGGCGCGGGCGcGcuGCa-- -3'
miRNA:   3'- -GGUCCUG-------------CCGCGCUUGCuCuuCGagu -5'
11113 3' -55.4 NC_002794.1 + 105544 0.66 0.957382
Target:  5'- uCCGGcGGCGGCucggGCGAACGgauagggugcgcguAGAgcaggAGCUCGu -3'
miRNA:   3'- -GGUC-CUGCCG----CGCUUGC--------------UCU-----UCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 112630 0.66 0.954763
Target:  5'- uCCAcGGGCGGCuucuCGAGCagcaggcAGAGGCUCu -3'
miRNA:   3'- -GGU-CCUGCCGc---GCUUGc------UCUUCGAGu -5'
11113 3' -55.4 NC_002794.1 + 104463 0.66 0.954763
Target:  5'- gCCcGGGCGGCGUGugcaggauGCGGGcGGC-CAc -3'
miRNA:   3'- -GGuCCUGCCGCGCu-------UGCUCuUCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 93847 0.66 0.954763
Target:  5'- aUCAuGGACGGcCGCGGcgGCGAGccGCcCGa -3'
miRNA:   3'- -GGU-CCUGCC-GCGCU--UGCUCuuCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 95850 0.66 0.950837
Target:  5'- gCCGGGGaGGCgGCGGGCGGGccGUUUc -3'
miRNA:   3'- -GGUCCUgCCG-CGCUUGCUCuuCGAGu -5'
11113 3' -55.4 NC_002794.1 + 80415 0.66 0.950837
Target:  5'- cCCAGG-UGGCGcCGGGCGGGGccgccgccGGCg-- -3'
miRNA:   3'- -GGUCCuGCCGC-GCUUGCUCU--------UCGagu -5'
11113 3' -55.4 NC_002794.1 + 149463 0.66 0.950837
Target:  5'- -gGGGGCGGuCGagGAGCGAGGGggggcggcauGCUCGg -3'
miRNA:   3'- ggUCCUGCC-GCg-CUUGCUCUU----------CGAGU- -5'
11113 3' -55.4 NC_002794.1 + 8761 0.66 0.950837
Target:  5'- gUCGcGACGGCGUGAagacgGCGuGGGAGCUgCAg -3'
miRNA:   3'- -GGUcCUGCCGCGCU-----UGC-UCUUCGA-GU- -5'
11113 3' -55.4 NC_002794.1 + 128466 0.66 0.946689
Target:  5'- cCCAGGACgaccggucaccgGGuCGCGGACcGGggGC-CGu -3'
miRNA:   3'- -GGUCCUG------------CC-GCGCUUGcUCuuCGaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.