Results 41 - 60 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11113 | 3' | -55.4 | NC_002794.1 | + | 36991 | 0.67 | 0.942316 |
Target: 5'- gCAGGuCGGCgagGCGGACccgguaGAGcGGCUCGg -3' miRNA: 3'- gGUCCuGCCG---CGCUUG------CUCuUCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 38432 | 0.67 | 0.942316 |
Target: 5'- uCCAuGGCGGCGggcCGGACuGAGGAGC-CGg -3' miRNA: 3'- -GGUcCUGCCGC---GCUUG-CUCUUCGaGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 4755 | 0.67 | 0.942316 |
Target: 5'- gCUAGGACGGUGCucAUG---GGCUCGa -3' miRNA: 3'- -GGUCCUGCCGCGcuUGCucuUCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 9739 | 0.67 | 0.942316 |
Target: 5'- aCCGGGugGGUagGUGGGgGGGggG-UCAg -3' miRNA: 3'- -GGUCCugCCG--CGCUUgCUCuuCgAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 178273 | 0.67 | 0.937718 |
Target: 5'- aCCGGaGACGGgGuCGGuCGAGcgacGGCUCGa -3' miRNA: 3'- -GGUC-CUGCCgC-GCUuGCUCu---UCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 120144 | 0.67 | 0.937718 |
Target: 5'- aCGGGcCGGUGcCGGACGAcGAGGacCUCGa -3' miRNA: 3'- gGUCCuGCCGC-GCUUGCU-CUUC--GAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 145100 | 0.67 | 0.937245 |
Target: 5'- aCC-GGACGGUccucuacGCGGuguCGGGGcAGCUCAu -3' miRNA: 3'- -GGuCCUGCCG-------CGCUu--GCUCU-UCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 96894 | 0.67 | 0.937718 |
Target: 5'- aCGGGGCaGGCGuCGGGCG-GAGGUggCGg -3' miRNA: 3'- gGUCCUG-CCGC-GCUUGCuCUUCGa-GU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 44242 | 0.67 | 0.937718 |
Target: 5'- gCCGGG-CGGCuCGGugcCGGGcGGCUCGg -3' miRNA: 3'- -GGUCCuGCCGcGCUu--GCUCuUCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 91229 | 0.67 | 0.937718 |
Target: 5'- --cGGACGGCGCGGcggccguCGGGcugcGCUCGc -3' miRNA: 3'- gguCCUGCCGCGCUu------GCUCuu--CGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 114614 | 0.67 | 0.937718 |
Target: 5'- uCCAGG-UGGCGCaGcagguccucGGCGcGGAGCUCGa -3' miRNA: 3'- -GGUCCuGCCGCG-C---------UUGCuCUUCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 146918 | 0.68 | 0.905322 |
Target: 5'- gCgGGGAuCGGC-CGGACGgAGAGcGCUCGg -3' miRNA: 3'- -GgUCCU-GCCGcGCUUGC-UCUU-CGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 93152 | 0.68 | 0.905322 |
Target: 5'- uCCGuGGccauCGGCaaGAugGAGGAGUUCAa -3' miRNA: 3'- -GGU-CCu---GCCGcgCUugCUCUUCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 150538 | 0.68 | 0.902871 |
Target: 5'- gCCGGGcCGGCGCcAugGccgucucggcgcuGGAGCUCAu -3' miRNA: 3'- -GGUCCuGCCGCGcUugCu------------CUUCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 10642 | 0.68 | 0.901632 |
Target: 5'- gCGGGgaGCGGCGCGAgcccgACGAGcgucuggagccgccuGAGCUUc -3' miRNA: 3'- gGUCC--UGCCGCGCU-----UGCUC---------------UUCGAGu -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 146641 | 0.68 | 0.905322 |
Target: 5'- aCCGGGAgCGGCGaCGAacACGAGccguuGCUgGa -3' miRNA: 3'- -GGUCCU-GCCGC-GCU--UGCUCuu---CGAgU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 195367 | 0.68 | 0.916471 |
Target: 5'- aCCAGGgacucguACuGCGCGAACGAGuGAG-UCAg -3' miRNA: 3'- -GGUCC-------UGcCGCGCUUGCUC-UUCgAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 102168 | 0.68 | 0.917035 |
Target: 5'- gCCGGGGCcaucguGGCGCGcGGCGAGGaccuGGCg-- -3' miRNA: 3'- -GGUCCUG------CCGCGC-UUGCUCU----UCGagu -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 80007 | 0.68 | 0.917035 |
Target: 5'- aCgAGGACGGCGaCGAGgaggcCGGGGAGaccaCUCGc -3' miRNA: 3'- -GgUCCUGCCGC-GCUU-----GCUCUUC----GAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 111898 | 0.68 | 0.899127 |
Target: 5'- uCCAGGGCGaucuGC-CGuuucguCGAGAGGCUCu -3' miRNA: 3'- -GGUCCUGC----CGcGCuu----GCUCUUCGAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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