miRNA display CGI


Results 61 - 80 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11113 3' -55.4 NC_002794.1 + 78386 0.68 0.886073
Target:  5'- gCCAGcGACGGCGaCGA-CGAGGc-CUCGc -3'
miRNA:   3'- -GGUC-CUGCCGC-GCUuGCUCUucGAGU- -5'
11113 3' -55.4 NC_002794.1 + 123808 0.68 0.899127
Target:  5'- uUCGGG--GGCGCGGACGAGcagGAGCg-- -3'
miRNA:   3'- -GGUCCugCCGCGCUUGCUC---UUCGagu -5'
11113 3' -55.4 NC_002794.1 + 50773 0.68 0.899127
Target:  5'- gCGGcGACGGCGCGucuCGGGcGGCg-- -3'
miRNA:   3'- gGUC-CUGCCGCGCuu-GCUCuUCGagu -5'
11113 3' -55.4 NC_002794.1 + 142619 0.68 0.899127
Target:  5'- gCAcGGGCGaguacaGCGCGAGcCGcAGggGCUCGu -3'
miRNA:   3'- gGU-CCUGC------CGCGCUU-GC-UCuuCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 31578 0.68 0.919268
Target:  5'- -aAGG-CGGCGCuGugcaguaagcaauacACGGGGAGCUCGa -3'
miRNA:   3'- ggUCCuGCCGCGcU---------------UGCUCUUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 80007 0.68 0.917035
Target:  5'- aCgAGGACGGCGaCGAGgaggcCGGGGAGaccaCUCGc -3'
miRNA:   3'- -GgUCCUGCCGC-GCUU-----GCUCUUC----GAGU- -5'
11113 3' -55.4 NC_002794.1 + 102168 0.68 0.917035
Target:  5'- gCCGGGGCcaucguGGCGCGcGGCGAGGaccuGGCg-- -3'
miRNA:   3'- -GGUCCUG------CCGCGC-UUGCUCU----UCGagu -5'
11113 3' -55.4 NC_002794.1 + 195367 0.68 0.916471
Target:  5'- aCCAGGgacucguACuGCGCGAACGAGuGAG-UCAg -3'
miRNA:   3'- -GGUCC-------UGcCGCGCUUGCUC-UUCgAGU- -5'
11113 3' -55.4 NC_002794.1 + 146641 0.68 0.905322
Target:  5'- aCCGGGAgCGGCGaCGAacACGAGccguuGCUgGa -3'
miRNA:   3'- -GGUCCU-GCCGC-GCU--UGCUCuu---CGAgU- -5'
11113 3' -55.4 NC_002794.1 + 10642 0.68 0.901632
Target:  5'- gCGGGgaGCGGCGCGAgcccgACGAGcgucuggagccgccuGAGCUUc -3'
miRNA:   3'- gGUCC--UGCCGCGCU-----UGCUC---------------UUCGAGu -5'
11113 3' -55.4 NC_002794.1 + 150538 0.68 0.902871
Target:  5'- gCCGGGcCGGCGCcAugGccgucucggcgcuGGAGCUCAu -3'
miRNA:   3'- -GGUCCuGCCGCGcUugCu------------CUUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 93152 0.68 0.905322
Target:  5'- uCCGuGGccauCGGCaaGAugGAGGAGUUCAa -3'
miRNA:   3'- -GGU-CCu---GCCGcgCUugCUCUUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 146918 0.68 0.905322
Target:  5'- gCgGGGAuCGGC-CGGACGgAGAGcGCUCGg -3'
miRNA:   3'- -GgUCCU-GCCGcGCUUGC-UCUU-CGAGU- -5'
11113 3' -55.4 NC_002794.1 + 111898 0.68 0.899127
Target:  5'- uCCAGGGCGaucuGC-CGuuucguCGAGAGGCUCu -3'
miRNA:   3'- -GGUCCUGC----CGcGCuu----GCUCUUCGAGu -5'
11113 3' -55.4 NC_002794.1 + 179241 0.69 0.869274
Target:  5'- aCAGGuCGGCGUcGGCGAGAccgccgccgagacGCUCAg -3'
miRNA:   3'- gGUCCuGCCGCGcUUGCUCUu------------CGAGU- -5'
11113 3' -55.4 NC_002794.1 + 107879 0.69 0.872158
Target:  5'- gCGGaGGCGGCGCGG-CGGGugcGGCUg- -3'
miRNA:   3'- gGUC-CUGCCGCGCUuGCUCu--UCGAgu -5'
11113 3' -55.4 NC_002794.1 + 70738 0.69 0.872158
Target:  5'- aCCAGGAgCaGCGCGAGCccGGGAaacAGCUgGg -3'
miRNA:   3'- -GGUCCU-GcCGCGCUUG--CUCU---UCGAgU- -5'
11113 3' -55.4 NC_002794.1 + 58380 0.69 0.879221
Target:  5'- uCCAGGAgGcGCGCGGGCGccagcugcuGGAGCa-- -3'
miRNA:   3'- -GGUCCUgC-CGCGCUUGCu--------CUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 127691 0.69 0.869998
Target:  5'- gUCGGGGCGaCGUGggUGGGAcaggagaacgauggGGCUCGc -3'
miRNA:   3'- -GGUCCUGCcGCGCuuGCUCU--------------UCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 128093 0.69 0.864888
Target:  5'- gUCGGcGACGGgGagcucGACGGGggGCUCGg -3'
miRNA:   3'- -GGUC-CUGCCgCgc---UUGCUCuuCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.