miRNA display CGI


Results 81 - 100 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11113 3' -55.4 NC_002794.1 + 179241 0.69 0.869274
Target:  5'- aCAGGuCGGCGUcGGCGAGAccgccgccgagacGCUCAg -3'
miRNA:   3'- gGUCCuGCCGCGcUUGCUCUu------------CGAGU- -5'
11113 3' -55.4 NC_002794.1 + 107879 0.69 0.872158
Target:  5'- gCGGaGGCGGCGCGG-CGGGugcGGCUg- -3'
miRNA:   3'- gGUC-CUGCCGCGCUuGCUCu--UCGAgu -5'
11113 3' -55.4 NC_002794.1 + 70738 0.69 0.872158
Target:  5'- aCCAGGAgCaGCGCGAGCccGGGAaacAGCUgGg -3'
miRNA:   3'- -GGUCCU-GcCGCGCUUG--CUCU---UCGAgU- -5'
11113 3' -55.4 NC_002794.1 + 58380 0.69 0.879221
Target:  5'- uCCAGGAgGcGCGCGGGCGccagcugcuGGAGCa-- -3'
miRNA:   3'- -GGUCCUgC-CGCGCUUGCu--------CUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 127691 0.69 0.869998
Target:  5'- gUCGGGGCGaCGUGggUGGGAcaggagaacgauggGGCUCGc -3'
miRNA:   3'- -GGUCCUGCcGCGCuuGCUCU--------------UCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 140186 0.69 0.879221
Target:  5'- gUCGGcGACGGCGuCGu-CGAGggGCg-- -3'
miRNA:   3'- -GGUC-CUGCCGC-GCuuGCUCuuCGagu -5'
11113 3' -55.4 NC_002794.1 + 185131 0.7 0.817258
Target:  5'- aCCAGG-CGGCGCcgcguCGAGAAGaUCGc -3'
miRNA:   3'- -GGUCCuGCCGCGcuu--GCUCUUCgAGU- -5'
11113 3' -55.4 NC_002794.1 + 97372 0.7 0.817258
Target:  5'- aCCAGGACaGCuacCGcAACGAGAccauguGGCUCAu -3'
miRNA:   3'- -GGUCCUGcCGc--GC-UUGCUCU------UCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 108341 0.7 0.817258
Target:  5'- gCAGGAggaggUGGCG-GAGCGGGGAGCg-- -3'
miRNA:   3'- gGUCCU-----GCCGCgCUUGCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 150661 0.7 0.808712
Target:  5'- aCCuGGGCuGGCccGCGAACGAGguGCUg- -3'
miRNA:   3'- -GGuCCUG-CCG--CGCUUGCUCuuCGAgu -5'
11113 3' -55.4 NC_002794.1 + 42592 0.7 0.800014
Target:  5'- -gAGGAgGGCGCGGcggcCGGGAgcgGGCUCu -3'
miRNA:   3'- ggUCCUgCCGCGCUu---GCUCU---UCGAGu -5'
11113 3' -55.4 NC_002794.1 + 112305 0.7 0.817258
Target:  5'- cCCGGGuccgacuuCGGCGcCGAcgGCGGGGAGCg-- -3'
miRNA:   3'- -GGUCCu-------GCCGC-GCU--UGCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 149830 0.7 0.824811
Target:  5'- cCCgAGGACGGgcggggacgaggaCGgGGACGAGGAGCg-- -3'
miRNA:   3'- -GG-UCCUGCC-------------GCgCUUGCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 117860 0.7 0.825641
Target:  5'- aCgGGGGCuGGCGCGcca-GGGAGCUCAg -3'
miRNA:   3'- -GgUCCUG-CCGCGCuugcUCUUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 191908 0.7 0.824811
Target:  5'- aCCGGGAcCGGCugaaucgGCGAagACGAGAGGaUCGg -3'
miRNA:   3'- -GGUCCU-GCCG-------CGCU--UGCUCUUCgAGU- -5'
11113 3' -55.4 NC_002794.1 + 91292 0.7 0.833856
Target:  5'- aCGuGuCGGCGCuGAGCGAGgcGCUCu -3'
miRNA:   3'- gGUcCuGCCGCG-CUUGCUCuuCGAGu -5'
11113 3' -55.4 NC_002794.1 + 143538 0.7 0.833856
Target:  5'- uCCAGGA-GGCGCGGcACGAGcacgguGGCcCAg -3'
miRNA:   3'- -GGUCCUgCCGCGCU-UGCUCu-----UCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 91882 0.7 0.841895
Target:  5'- gCGGcGGCGGcCGCG-ACGAGcAGUUCAc -3'
miRNA:   3'- gGUC-CUGCC-GCGCuUGCUCuUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 58067 0.7 0.841895
Target:  5'- cCCGGcGGCGGCG-GGACGGGcGGCcCGg -3'
miRNA:   3'- -GGUC-CUGCCGCgCUUGCUCuUCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 94280 0.71 0.782187
Target:  5'- gCGGcGCGGCcCGAGCGGGGggcGGCUCGg -3'
miRNA:   3'- gGUCcUGCCGcGCUUGCUCU---UCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.