miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11113 3' -55.4 NC_002794.1 + 92307 0.72 0.706398
Target:  5'- gCGGGGCugGGCGCGGGCGgcGGggGCcCGg -3'
miRNA:   3'- gGUCCUG--CCGCGCUUGC--UCuuCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 112341 0.72 0.696562
Target:  5'- gCCGGccGGCGGCGCcggcggcgGGGCGGGGAGCUg- -3'
miRNA:   3'- -GGUC--CUGCCGCG--------CUUGCUCUUCGAgu -5'
11113 3' -55.4 NC_002794.1 + 138707 0.72 0.715199
Target:  5'- -gAGGGCGGCGUGGAcucgcguCGAGccGGCUCGa -3'
miRNA:   3'- ggUCCUGCCGCGCUU-------GCUCu-UCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 37746 0.71 0.754499
Target:  5'- gCCGGcGGCGGCGCGGcggcgccgGCGGGAgcGGCcgUCGu -3'
miRNA:   3'- -GGUC-CUGCCGCGCU--------UGCUCU--UCG--AGU- -5'
11113 3' -55.4 NC_002794.1 + 152635 0.71 0.773076
Target:  5'- uCCuGGGCGGCGUucGAgcgGCGAGAcgucguGCUCGa -3'
miRNA:   3'- -GGuCCUGCCGCG--CU---UGCUCUu-----CGAGU- -5'
11113 3' -55.4 NC_002794.1 + 94280 0.71 0.782187
Target:  5'- gCGGcGCGGCcCGAGCGGGGggcGGCUCGg -3'
miRNA:   3'- gGUCcUGCCGcGCUUGCUCU---UCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 64843 0.71 0.773076
Target:  5'- aCC-GGACGGCGCGGcggcaccucgACGuGccGCUCGa -3'
miRNA:   3'- -GGuCCUGCCGCGCU----------UGCuCuuCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 147223 0.71 0.788489
Target:  5'- gCCGGGGCguuGGCGCGAugggccCGAGAGcacuccgggcagacGCUCGa -3'
miRNA:   3'- -GGUCCUG---CCGCGCUu-----GCUCUU--------------CGAGU- -5'
11113 3' -55.4 NC_002794.1 + 44298 0.71 0.773076
Target:  5'- gCCGGGcCGGCGa-GGCGGGGAGCg-- -3'
miRNA:   3'- -GGUCCuGCCGCgcUUGCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 108372 0.71 0.763844
Target:  5'- -gAGGACcgGGCGCcgGAGCGGGGAGCg-- -3'
miRNA:   3'- ggUCCUG--CCGCG--CUUGCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 94049 0.71 0.763844
Target:  5'- gCGGcGGCGGUGCGGgggcgGCGGGggGCg-- -3'
miRNA:   3'- gGUC-CUGCCGCGCU-----UGCUCuuCGagu -5'
11113 3' -55.4 NC_002794.1 + 44163 0.71 0.773076
Target:  5'- aCguGcACGGCGCGAGCG-GcGGCUCGu -3'
miRNA:   3'- -GguCcUGCCGCGCUUGCuCuUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 102643 0.71 0.754499
Target:  5'- gCCGGcuGGCGGCGCGcuCGgAGGAGCUg- -3'
miRNA:   3'- -GGUC--CUGCCGCGCuuGC-UCUUCGAgu -5'
11113 3' -55.4 NC_002794.1 + 115750 0.71 0.763844
Target:  5'- aUCAGGuACGGCGCGAuCGGc--GCUCGa -3'
miRNA:   3'- -GGUCC-UGCCGCGCUuGCUcuuCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 108341 0.7 0.817258
Target:  5'- gCAGGAggaggUGGCG-GAGCGGGGAGCg-- -3'
miRNA:   3'- gGUCCU-----GCCGCgCUUGCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 42592 0.7 0.800014
Target:  5'- -gAGGAgGGCGCGGcggcCGGGAgcgGGCUCu -3'
miRNA:   3'- ggUCCUgCCGCGCUu---GCUCU---UCGAGu -5'
11113 3' -55.4 NC_002794.1 + 58067 0.7 0.841895
Target:  5'- cCCGGcGGCGGCG-GGACGGGcGGCcCGg -3'
miRNA:   3'- -GGUC-CUGCCGCgCUUGCUCuUCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 191908 0.7 0.824811
Target:  5'- aCCGGGAcCGGCugaaucgGCGAagACGAGAGGaUCGg -3'
miRNA:   3'- -GGUCCU-GCCG-------CGCU--UGCUCUUCgAGU- -5'
11113 3' -55.4 NC_002794.1 + 91292 0.7 0.833856
Target:  5'- aCGuGuCGGCGCuGAGCGAGgcGCUCu -3'
miRNA:   3'- gGUcCuGCCGCG-CUUGCUCuuCGAGu -5'
11113 3' -55.4 NC_002794.1 + 143538 0.7 0.833856
Target:  5'- uCCAGGA-GGCGCGGcACGAGcacgguGGCcCAg -3'
miRNA:   3'- -GGUCCUgCCGCGCU-UGCUCu-----UCGaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.