miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11113 3' -55.4 NC_002794.1 + 38636 0.78 0.392586
Target:  5'- gCCGGuGCGGCGCG-ACG-GAGGCUCGa -3'
miRNA:   3'- -GGUCcUGCCGCGCuUGCuCUUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 145603 0.77 0.426485
Target:  5'- cCCGcGGAgucgGGCGCG-ACGAGGAGCUCGg -3'
miRNA:   3'- -GGU-CCUg---CCGCGCuUGCUCUUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 139997 0.77 0.462062
Target:  5'- gCGGGACGGUGCGggUG-GAGGCcgCGg -3'
miRNA:   3'- gGUCCUGCCGCGCuuGCuCUUCGa-GU- -5'
11113 3' -55.4 NC_002794.1 + 134122 0.76 0.518171
Target:  5'- uCCGuccGACGGCGCGGcgaGCGcGGAAGCUCGg -3'
miRNA:   3'- -GGUc--CUGCCGCGCU---UGC-UCUUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 129225 0.75 0.537484
Target:  5'- --uGGAUaGGCGCGAACGGGcGGCUCc -3'
miRNA:   3'- gguCCUG-CCGCGCUUGCUCuUCGAGu -5'
11113 3' -55.4 NC_002794.1 + 140035 0.75 0.547233
Target:  5'- cCCGcGGGCGGCGgGAgacACGgaaAGggGCUCAc -3'
miRNA:   3'- -GGU-CCUGCCGCgCU---UGC---UCuuCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 129333 0.75 0.547233
Target:  5'- cCCGGGGCGGCGguuuccaGAACGGGguGaCUCAa -3'
miRNA:   3'- -GGUCCUGCCGCg------CUUGCUCuuC-GAGU- -5'
11113 3' -55.4 NC_002794.1 + 150597 0.75 0.557038
Target:  5'- cCCgAGGACGGC-CGGGCGccggcucugcGGGAGCUCGu -3'
miRNA:   3'- -GG-UCCUGCCGcGCUUGC----------UCUUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 51271 0.75 0.576792
Target:  5'- gCCGGGAggcaGGCGCGGcccgcccgaACGGGcAGGCUCGa -3'
miRNA:   3'- -GGUCCUg---CCGCGCU---------UGCUC-UUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 2896 0.75 0.576792
Target:  5'- aCCGGG-CGGCGUucuccuggGAAaagGAGAAGCUCAa -3'
miRNA:   3'- -GGUCCuGCCGCG--------CUUg--CUCUUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 148076 0.74 0.586728
Target:  5'- gCCGGGAgUGGCcuCGAGCGAGGAGCa-- -3'
miRNA:   3'- -GGUCCU-GCCGc-GCUUGCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 115885 0.74 0.596696
Target:  5'- uCCGGGGCGucCGCGGagcGCGGGggGUUCGu -3'
miRNA:   3'- -GGUCCUGCc-GCGCU---UGCUCuuCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 107222 0.74 0.616701
Target:  5'- gCCGGG-CGGCGCGcGACGGGGgcGGCgUCGc -3'
miRNA:   3'- -GGUCCuGCCGCGC-UUGCUCU--UCG-AGU- -5'
11113 3' -55.4 NC_002794.1 + 95762 0.73 0.656785
Target:  5'- gCGGGGCGGCggccGCGAcggcggccgggGCGAGAGGCg-- -3'
miRNA:   3'- gGUCCUGCCG----CGCU-----------UGCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 112341 0.72 0.696562
Target:  5'- gCCGGccGGCGGCGCcggcggcgGGGCGGGGAGCUg- -3'
miRNA:   3'- -GGUC--CUGCCGCG--------CUUGCUCUUCGAgu -5'
11113 3' -55.4 NC_002794.1 + 160822 0.72 0.706398
Target:  5'- aCguGGACGGUGCGAACGGc--GCUUg -3'
miRNA:   3'- -GguCCUGCCGCGCUUGCUcuuCGAGu -5'
11113 3' -55.4 NC_002794.1 + 92307 0.72 0.706398
Target:  5'- gCGGGGCugGGCGCGGGCGgcGGggGCcCGg -3'
miRNA:   3'- gGUCCUG--CCGCGCUUGC--UCuuCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 138707 0.72 0.715199
Target:  5'- -gAGGGCGGCGUGGAcucgcguCGAGccGGCUCGa -3'
miRNA:   3'- ggUCCUGCCGCGCUU-------GCUCu-UCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 141425 0.72 0.72588
Target:  5'- uCgGGGGCGGCGgGGGCGccGGggGCg-- -3'
miRNA:   3'- -GgUCCUGCCGCgCUUGC--UCuuCGagu -5'
11113 3' -55.4 NC_002794.1 + 177964 0.72 0.735509
Target:  5'- --uGGACGGUgGUGGACGguuGGAGGCUCGc -3'
miRNA:   3'- gguCCUGCCG-CGCUUGC---UCUUCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.