miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11113 3' -55.4 NC_002794.1 + 149830 0.7 0.824811
Target:  5'- cCCgAGGACGGgcggggacgaggaCGgGGACGAGGAGCg-- -3'
miRNA:   3'- -GG-UCCUGCC-------------GCgCUUGCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 191908 0.7 0.824811
Target:  5'- aCCGGGAcCGGCugaaucgGCGAagACGAGAGGaUCGg -3'
miRNA:   3'- -GGUCCU-GCCG-------CGCU--UGCUCUUCgAGU- -5'
11113 3' -55.4 NC_002794.1 + 117860 0.7 0.825641
Target:  5'- aCgGGGGCuGGCGCGcca-GGGAGCUCAg -3'
miRNA:   3'- -GgUCCUG-CCGCGCuugcUCUUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 91292 0.7 0.833856
Target:  5'- aCGuGuCGGCGCuGAGCGAGgcGCUCu -3'
miRNA:   3'- gGUcCuGCCGCG-CUUGCUCuuCGAGu -5'
11113 3' -55.4 NC_002794.1 + 143538 0.7 0.833856
Target:  5'- uCCAGGA-GGCGCGGcACGAGcacgguGGCcCAg -3'
miRNA:   3'- -GGUCCUgCCGCGCU-UGCUCu-----UCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 58067 0.7 0.841895
Target:  5'- cCCGGcGGCGGCG-GGACGGGcGGCcCGg -3'
miRNA:   3'- -GGUC-CUGCCGCgCUUGCUCuUCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 91882 0.7 0.841895
Target:  5'- gCGGcGGCGGcCGCG-ACGAGcAGUUCAc -3'
miRNA:   3'- gGUC-CUGCC-GCGCuUGCUCuUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 53296 0.69 0.850526
Target:  5'- uCCAGGugccgagcggucggcCGGCGCc-GCGAGAucGGCUCGa -3'
miRNA:   3'- -GGUCCu--------------GCCGCGcuUGCUCU--UCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 179607 0.69 0.857417
Target:  5'- uCgAGGAgCGGCGCGAGCGAcugccgGgcGCUg- -3'
miRNA:   3'- -GgUCCU-GCCGCGCUUGCU------CuuCGAgu -5'
11113 3' -55.4 NC_002794.1 + 2618 0.69 0.857417
Target:  5'- cCCGGccgcCGGCGCGcguccccagcaAAUGAGGAGCUCc -3'
miRNA:   3'- -GGUCcu--GCCGCGC-----------UUGCUCUUCGAGu -5'
11113 3' -55.4 NC_002794.1 + 142210 0.69 0.857417
Target:  5'- gCGGcGGCGGCaGCGGcgguGCGGGGAGCg-- -3'
miRNA:   3'- gGUC-CUGCCG-CGCU----UGCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 41011 0.69 0.864888
Target:  5'- gCAGGAUGGCGgaGACGAGgcGCa-- -3'
miRNA:   3'- gGUCCUGCCGCgcUUGCUCuuCGagu -5'
11113 3' -55.4 NC_002794.1 + 128093 0.69 0.864888
Target:  5'- gUCGGcGACGGgGagcucGACGGGggGCUCGg -3'
miRNA:   3'- -GGUC-CUGCCgCgc---UUGCUCuuCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 179241 0.69 0.869274
Target:  5'- aCAGGuCGGCGUcGGCGAGAccgccgccgagacGCUCAg -3'
miRNA:   3'- gGUCCuGCCGCGcUUGCUCUu------------CGAGU- -5'
11113 3' -55.4 NC_002794.1 + 127691 0.69 0.869998
Target:  5'- gUCGGGGCGaCGUGggUGGGAcaggagaacgauggGGCUCGc -3'
miRNA:   3'- -GGUCCUGCcGCGCuuGCUCU--------------UCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 107879 0.69 0.872158
Target:  5'- gCGGaGGCGGCGCGG-CGGGugcGGCUg- -3'
miRNA:   3'- gGUC-CUGCCGCGCUuGCUCu--UCGAgu -5'
11113 3' -55.4 NC_002794.1 + 70738 0.69 0.872158
Target:  5'- aCCAGGAgCaGCGCGAGCccGGGAaacAGCUgGg -3'
miRNA:   3'- -GGUCCU-GcCGCGCUUG--CUCU---UCGAgU- -5'
11113 3' -55.4 NC_002794.1 + 140186 0.69 0.879221
Target:  5'- gUCGGcGACGGCGuCGu-CGAGggGCg-- -3'
miRNA:   3'- -GGUC-CUGCCGC-GCuuGCUCuuCGagu -5'
11113 3' -55.4 NC_002794.1 + 58380 0.69 0.879221
Target:  5'- uCCAGGAgGcGCGCGGGCGccagcugcuGGAGCa-- -3'
miRNA:   3'- -GGUCCUgC-CGCGCUUGCu--------CUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 78386 0.68 0.886073
Target:  5'- gCCAGcGACGGCGaCGA-CGAGGc-CUCGc -3'
miRNA:   3'- -GGUC-CUGCCGC-GCUuGCUCUucGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.