Results 61 - 80 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11113 | 3' | -55.4 | NC_002794.1 | + | 94218 | 0.68 | 0.886073 |
Target: 5'- aCGGuGGCGGCGaCGGGCGGGcGGGC-CGg -3' miRNA: 3'- gGUC-CUGCCGC-GCUUGCUC-UUCGaGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 148151 | 0.68 | 0.886073 |
Target: 5'- gCgAGGGCGGuCGCGAcggaAgGAGggGgUCGc -3' miRNA: 3'- -GgUCCUGCC-GCGCU----UgCUCuuCgAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 180308 | 0.68 | 0.892709 |
Target: 5'- gCC-GGcCGGCGCGAccagACGAuGAAGCcCAg -3' miRNA: 3'- -GGuCCuGCCGCGCU----UGCU-CUUCGaGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 153059 | 0.68 | 0.892709 |
Target: 5'- --cGGACGGUcccCGAGCGAcggucgGAAGCUCGc -3' miRNA: 3'- gguCCUGCCGc--GCUUGCU------CUUCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 44090 | 0.68 | 0.892709 |
Target: 5'- aCCGGGcaguaACGGUGCGccGACGAGcgccgcaucAGCUCGc -3' miRNA: 3'- -GGUCC-----UGCCGCGC--UUGCUCu--------UCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 21518 | 0.68 | 0.892709 |
Target: 5'- uCgAGGACGG-GCGGAuCGGGAucggcuAGCUCc -3' miRNA: 3'- -GgUCCUGCCgCGCUU-GCUCU------UCGAGu -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 47853 | 0.68 | 0.894658 |
Target: 5'- gCAGG-CGGCGUagagaucguaggccaGGACGuacguguAGAGGCUCAg -3' miRNA: 3'- gGUCCuGCCGCG---------------CUUGC-------UCUUCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 125752 | 0.68 | 0.897225 |
Target: 5'- gCGGGACGGCggccgGCGGcucgccacccggcuGCGAGc-GCUCAa -3' miRNA: 3'- gGUCCUGCCG-----CGCU--------------UGCUCuuCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 42957 | 0.68 | 0.899127 |
Target: 5'- cCCAGcACGGCGUGGAUGuAGGccAGCUg- -3' miRNA: 3'- -GGUCcUGCCGCGCUUGC-UCU--UCGAgu -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 111898 | 0.68 | 0.899127 |
Target: 5'- uCCAGGGCGaucuGC-CGuuucguCGAGAGGCUCu -3' miRNA: 3'- -GGUCCUGC----CGcGCuu----GCUCUUCGAGu -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 142619 | 0.68 | 0.899127 |
Target: 5'- gCAcGGGCGaguacaGCGCGAGcCGcAGggGCUCGu -3' miRNA: 3'- gGU-CCUGC------CGCGCUU-GC-UCuuCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 50773 | 0.68 | 0.899127 |
Target: 5'- gCGGcGACGGCGCGucuCGGGcGGCg-- -3' miRNA: 3'- gGUC-CUGCCGCGCuu-GCUCuUCGagu -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 123808 | 0.68 | 0.899127 |
Target: 5'- uUCGGG--GGCGCGGACGAGcagGAGCg-- -3' miRNA: 3'- -GGUCCugCCGCGCUUGCUC---UUCGagu -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 10642 | 0.68 | 0.901632 |
Target: 5'- gCGGGgaGCGGCGCGAgcccgACGAGcgucuggagccgccuGAGCUUc -3' miRNA: 3'- gGUCC--UGCCGCGCU-----UGCUC---------------UUCGAGu -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 150538 | 0.68 | 0.902871 |
Target: 5'- gCCGGGcCGGCGCcAugGccgucucggcgcuGGAGCUCAu -3' miRNA: 3'- -GGUCCuGCCGCGcUugCu------------CUUCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 93152 | 0.68 | 0.905322 |
Target: 5'- uCCGuGGccauCGGCaaGAugGAGGAGUUCAa -3' miRNA: 3'- -GGU-CCu---GCCGcgCUugCUCUUCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 146918 | 0.68 | 0.905322 |
Target: 5'- gCgGGGAuCGGC-CGGACGgAGAGcGCUCGg -3' miRNA: 3'- -GgUCCU-GCCGcGCUUGC-UCUU-CGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 146641 | 0.68 | 0.905322 |
Target: 5'- aCCGGGAgCGGCGaCGAacACGAGccguuGCUgGa -3' miRNA: 3'- -GGUCCU-GCCGC-GCU--UGCUCuu---CGAgU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 195367 | 0.68 | 0.916471 |
Target: 5'- aCCAGGgacucguACuGCGCGAACGAGuGAG-UCAg -3' miRNA: 3'- -GGUCC-------UGcCGCGCUUGCUC-UUCgAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 102168 | 0.68 | 0.917035 |
Target: 5'- gCCGGGGCcaucguGGCGCGcGGCGAGGaccuGGCg-- -3' miRNA: 3'- -GGUCCUG------CCGCGC-UUGCUCU----UCGagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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